scholarly journals Complete Genome Sequence of Bifidobacterium longum Strain Jih1, Isolated from Human Feces

2020 ◽  
Vol 9 (22) ◽  
Author(s):  
Hikaru Inoue ◽  
Sayaka Shibata ◽  
Konosuke Ii ◽  
Joe Inoue ◽  
Shinji Fukuda ◽  
...  
Keyword(s):  
Genome Sequence ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
Bifidobacterium Longum ◽  
Human Feces ◽  
Circular Chromosome ◽  
Protein Coding ◽  
Content Type ◽  
Protein Coding Genes

ABSTRACT We report the complete genome sequence of Bifidobacterium longum strain Jih1, isolated from human feces. The assembled genome comprised one circular chromosome of 2.37 Mb. The chromosome harbors 1,941 protein-coding genes.

scholarly journals Complete Genome Sequence of Bifidobacterium longum subsp. longum JCM7052

2021 ◽  
Vol 10 (14) ◽  
Author(s):  
Isamu Yamamoto ◽  
Yumiko Ueno ◽  
Miho Geshi ◽  
Yoshishige Inagaki ◽  
Toshitaka Odamaki ◽  
...  
Keyword(s):  
Energy Source ◽  
Genome Sequence ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
Bifidobacterium Longum ◽  
Gum Arabic ◽  
Human Feces ◽  
Protein Coding ◽  
Content Type ◽  
Protein Coding Genes

ABSTRACT We report the complete genome sequence of Bifidobacterium longum subsp. longum JCM7052, isolated from human feces in Japan. This strain has the capability of growing on and utilizing gum arabic as an energy source. The complete genome is 2,273,627 bp long, with 1,929 protein-coding genes and 59.9 mol% G+C content.

scholarly journals Complete Genome Sequence of Desulfovibrio desulfuricans IC1, a Sulfonate-Respiring Anaerobe

2019 ◽  
Vol 8 (31) ◽  
Author(s):  
Leslie A. Day ◽  
Kara B. De León ◽  
Megan L. Kempher ◽  
Jizhong Zhou ◽  
Judy D. Wall
Keyword(s):  
Genome Sequence ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
Desulfovibrio Desulfuricans ◽  
Sulfur Cycle ◽  
Circular Chromosome ◽  
Protein Coding ◽  
Content Type ◽  
Sulfate Reducing ◽  
Protein Coding Genes

We report the complete genome sequence of the anaerobic, sulfonate-respiring, sulfate-reducing bacterium Desulfovibrio desulfuricans IC1. The genome was assembled into a single 3.25-Mb circular chromosome with 2,680 protein-coding genes identified. Sequencing of sulfonate-metabolizing anaerobes is key for understanding sulfonate degradation and its role in the sulfur cycle.

scholarly journals Complete Genome Sequence of Megamonas funiformis Strain 1CBH44, Isolated from Human Feces

2021 ◽  
Vol 10 (48) ◽  
Author(s):  
Yusuke Ogata ◽  
Mitsuo Sakamoto ◽  
Naveen Kumar ◽  
Moriya Ohkuma ◽  
Masahira Hattori ◽  
...  
Keyword(s):  
Genome Sequence ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
Gc Content ◽  
Rrna Genes ◽  
Trna Genes ◽  
Human Feces ◽  
Circular Chromosome ◽  
Protein Coding ◽  
Content Type

Here, we report the complete genome sequence of Megamonas funiformis strain 1CBH44, which was isolated from the feces of a healthy Japanese person. The genome consists of a circular chromosome (2,310,709 bp, with a GC content of 31.5%) and possesses 2,170 putative protein-coding genes, 18 rRNA genes, and 54 tRNA genes.

scholarly journals Complete Genome Sequence of the Virulent Aeromonas salmonicida subsp. masoucida Strain RFAS1

2018 ◽  
Vol 6 (22) ◽  
Author(s):  
Ahran Kim ◽  
Thanh Luan Nguyen ◽  
Do-Hyung Kim
Keyword(s):  
Genome Sequence ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
Aeromonas Salmonicida ◽  
Circular Chromosome ◽  
Protein Coding ◽  
Black Rockfish ◽  
Content Type ◽  
Protein Coding Genes

ABSTRACT Here, we report the complete genome sequence of the pathogenic Aeromonas salmonicida subsp. masoucida strain RFAS1, isolated from black rockfish and showing signs of furunculosis. Sequencing with the PacBio platform yielded a circular chromosome of 4,783,004 bp and two plasmids (70,968 bp and 63,563 bp) harboring 4,411, 67, and 71 protein-coding genes, respectively.

scholarly journals Complete Genome Sequence of Anaerostipes caccae Strain L1-92T, a Butyrate-Producing Bacterium Isolated from Human Feces

2021 ◽  
Vol 10 (16) ◽  
Author(s):  
Kana Morinaga ◽  
Hiroyuki Kusada ◽  
Miho Watanabe ◽  
Hideyuki Tamaki
Keyword(s):  
Genome Sequence ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
Human Feces ◽  
Protein Coding ◽  
Content Type ◽  
Protein Coding Genes

ABSTRACT Anaerostipes caccae strain L1-92T is a well-known butyrate-producing bacterium that has been isolated from human feces. In this announcement, we present the complete genome sequence of A. caccae strain L1-92T, which comprises 3,590,719 bp with a G+C content of 44.30%. The genome harbors 3,369 predicted protein-coding genes.

scholarly journals Complete Genome Sequence of Brevundimonas diminuta ATCC(B) 19146

2019 ◽  
Vol 8 (13) ◽  
Author(s):  
Qian Liang ◽  
Wenwen Yu ◽  
Ya Shi ◽  
Hong Li ◽  
Xu Fang ◽  
...  
Keyword(s):  
Genome Sequence ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
Circular Chromosome ◽  
Protein Coding ◽  
Content Type ◽  
Protein Coding Genes ◽  
Brevundimonas Diminuta

Here, we describe the complete genome sequence of the Brevundimonas diminuta ATCC(B) 19146 strain, which contains 3,375 protein-coding genes and 61 RNAs within its 3,551,819-bp-long genome. The genome consists of a circular chromosome.

scholarly journals Complete Genome Sequence of Cupriavidus necator H16 (DSM 428)

2019 ◽  
Vol 8 (37) ◽  
Author(s):  
Gareth T. Little ◽  
Muhammad Ehsaan ◽  
Christian Arenas-López ◽  
Kamran Jawed ◽  
Klaus Winzer ◽  
...  
Keyword(s):  
Genome Sequence ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
Cupriavidus Necator ◽  
Rrna Genes ◽  
Trna Genes ◽  
Protein Coding ◽  
Content Type ◽  
Protein Coding Genes ◽  
Cupriavidus Necator H16

The hydrogen-utilizing strain Cupriavidus necator H16 (DSM 428) was sequenced using a combination of PacBio and Illumina sequencing. Annotation of this strain reveals 6,543 protein-coding genes, 263 pseudogenes, 64 tRNA genes, and 15 rRNA genes.

scholarly journals Complete Genome Sequence of Stenotrophomonas maltophilia Myophage Moby

2020 ◽  
Vol 9 (1) ◽  
Author(s):  
Alison Vicary ◽  
Heather Newkirk ◽  
Russell Moreland ◽  
Carlos F. Gonzalez ◽  
Mei Liu ◽  
...  
Keyword(s):  
Multidrug Resistance ◽  
Genome Sequence ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
Stenotrophomonas Maltophilia ◽  
Nosocomial Pathogen ◽  
Protein Coding ◽  
Content Type ◽  
Protein Coding Genes ◽  
Phage T4

Stenotrophomonas maltophilia is a prevalent nosocomial pathogen with multidrug resistance. Here, we describe the complete genome of S. maltophilia myophage Moby, which shares characteristics with Enterobacteria phage T4 and is closely related to Stenotrophomonas phage IME-SM1. Moby has a 159,365-bp genome with 271 predicted protein-coding genes and 24 predicted tRNAs.

scholarly journals Complete Genome Sequence of Acinetobacter indicus Type Strain SGAir0564 Isolated from Tropical Air Collected in Singapore

2018 ◽  
Vol 6 (18) ◽  
pp. e00230-18 ◽  
Author(s):  
Vineeth Kodengil Vettath ◽  
Ana Carolina M. Junqueira ◽  
Akira Uchida ◽  
Rikky W. Purbojati ◽  
James N. I. Houghton ◽  
...  
Keyword(s):  
Genome Sequence ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
Type Strain ◽  
Protein Coding ◽  
Content Type ◽  
Air Samples ◽  
Protein Coding Genes ◽  
Long Reads

ABSTRACT Acinetobacter indicus (Gammaproteobacteria) is a strict aerobic nonmotile bacterium. The strain SGAir0564 was isolated from air samples collected in Singapore. The complete genome is 3.1 Mb and was assembled using a combination of short and long reads. The genome contains 2,808 protein-coding genes, 80 tRNAs, and 21 rRNA subunits.

scholarly journals Complete Genome Sequence of Citricoccus sp. Strain SGAir0253, Isolated from Indoor Air in Singapore

2019 ◽  
Vol 8 (37) ◽  
Author(s):  
Lakshmi Chandrasekaran ◽  
Daniela I. Drautz-Moses ◽  
Akira Uchida ◽  
Rikky W. Purbojati ◽  
Anthony Wong ◽  
...  
Keyword(s):  
Real Time ◽  
Genome Sequence ◽  
Single Molecule ◽  
Indoor Air ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
Protein Coding ◽  
Content Type ◽  
Protein Coding Genes

Citricoccus sp. strain SGAir0253 was isolated from indoor air collected in Singapore. Its genome sequence was assembled using single-molecule real-time sequencing. It comprises one chromosome of 3.32 Mb and two plasmids of 137 kb and 99 kb. The genome consists of 2,950 protein-coding genes, 49 tRNAs, and 9 rRNAs.

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