scholarly journals Complete Genome Sequence of a SARS-CoV-2 Strain Sampled in Morocco in May 2020, Obtained Using Sanger Sequencing

2021 ◽  
Vol 10 (20) ◽  
Author(s):  
Abderrazak Rfaki ◽  
Nadia Touil ◽  
Mouhssine Hemlali ◽  
Sanaâ Alaoui Amine ◽  
Marouane Melloul ◽  
...  
Keyword(s):  
Amino Acid ◽  
Severe Acute Respiratory Syndrome ◽  
Genome Sequence ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
Sanger Sequencing ◽  
Reference Strain ◽  
Nasopharyngeal Swab ◽  
Amino Acid Substitutions ◽  
Swab Specimen

ABSTRACT The complete genome sequence of a severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) strain was obtained. The strain was isolated from a nasopharyngeal swab specimen from a female patient in Rabat, Morocco, with coronavirus disease 2019 (COVID-19). This strain belongs to clade 20A and has 12 mutations and 8 amino acid substitutions compared to the reference strain Wuhan/Hu-1/2019.

scholarly journals Complete Genome Sequence of a 2019 Novel Coronavirus (SARS-CoV-2) Strain Causing a COVID-19 Case in Morocco

2020 ◽  
Vol 9 (27) ◽  
Author(s):  
Sanaâ Lemriss ◽  
Amal Souiri ◽  
Narjis Amar ◽  
Nabil Lemzaoui ◽  
Omar Mestoui ◽  
...  
Keyword(s):  
Severe Acute Respiratory Syndrome ◽  
Genome Sequence ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
Nasopharyngeal Swab ◽  
Novel Coronavirus ◽  
Swab Specimen ◽  
Moroccan Patient

ABSTRACT Here, we report a complete genome sequence obtained for a novel severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) strain isolated from a nasopharyngeal swab specimen of a Moroccan patient with coronavirus disease 2019 (COVID-19).

scholarly journals First Report of a SARS-CoV-2 Genome Sequence with a Spike His69-Val70 Deletion and an Asn439Lys Mutation in Morocco

2021 ◽  
Vol 10 (11) ◽  
Author(s):  
Tarik Aanniz ◽  
Mouna Ouadghiri ◽  
Mohammed Amine Bendahou ◽  
Mohammed Walid Chemao-Elfihri ◽  
Mohamed Chenaoui ◽  
...  
Keyword(s):  
Severe Acute Respiratory Syndrome ◽  
Male Patient ◽  
Genome Sequence ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
Clinical Sample ◽  
Nasopharyngeal Swab ◽  
Ion Torrent ◽  
First Report ◽  
Swab Specimen

ABSTRACT We report the nearly complete genome sequence and the genetic variations of a clinical sample of severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) collected from a nasopharyngeal swab specimen from a male patient from Harhoura-Rabat, Morocco. The sequence, which was obtained using Ion Torrent technology, is valuable as it carries a recently described deletion (His69-Val70) and substitution (Asn439Lys).

scholarly journals Genome Sequence of a SARS-CoV-2 P.1 Variant of Concern (20J/501Y.V3) from Bangladesh

2021 ◽  
Vol 10 (27) ◽  
Author(s):  
M. Murshed Hasan Sarkar ◽  
Mohammad Fazle Alam Rabbi ◽  
Shahina Akter ◽  
Tanjina Akhtar Banu ◽  
Barna Goswami ◽  
...  
Keyword(s):  
Phylogenetic Analysis ◽  
Severe Acute Respiratory Syndrome ◽  
Genome Sequence ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
Travel History ◽  
Oropharyngeal Swab ◽  
Swab Specimen

This study reports the coding-complete genome sequence, with variant identifications and phylogenetic analysis, of a severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) P.1 variant (20J/501Y.V3), obtained from an oropharyngeal swab specimen from a female Bangladeshi patient diagnosed with coronavirus disease 2019 (COVID-19) with no travel history.

scholarly journals Coding-Complete Genome Sequence of a SARS-CoV-2 Strain Isolated in Gilgit, Pakistan

2021 ◽  
Vol 10 (13) ◽  
Author(s):  
Aneela Javed ◽  
Saifullah Khan Niazi ◽  
Eijaz Ghani ◽  
Maham Yamin ◽  
Muhammad Saqib ◽  
...  
Keyword(s):  
Severe Acute Respiratory Syndrome ◽  
Genome Sequence ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
Nasopharyngeal Swab

ABSTRACT Here, we report the coding-complete genome sequence of a severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) isolate obtained from a nasopharyngeal swab from the first patient with COVID-19 in Gilgit, Pakistan.

scholarly journals Complete Genome Sequence of a 2019 Novel Coronavirus (SARS-CoV-2) Strain Isolated in Nepal

2020 ◽  
Vol 9 (11) ◽  
Author(s):  
Ranjit Sah ◽  
Alfonso J. Rodriguez-Morales ◽  
Runa Jha ◽  
Daniel K. W. Chu ◽  
Haogao Gu ◽  
...  
Keyword(s):  
Severe Acute Respiratory Syndrome ◽  
Genome Sequence ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
Oropharyngeal Swab ◽  
Novel Coronavirus ◽  
Swab Specimen

A complete genome sequence was obtained for a severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) strain isolated from an oropharyngeal swab specimen of a Nepalese patient with coronavirus disease 2019 (COVID-19), who had returned to Nepal after traveling to Wuhan, China.

scholarly journals Complete Genome Sequence of a Novel Coronavirus (SARS-CoV-2) Isolate from Bangladesh

2020 ◽  
Vol 9 (24) ◽  
Author(s):  
Senjuti Saha ◽  
Roly Malaker ◽  
Mohammad Saiful Islam Sajib ◽  
Md Hasanuzzaman ◽  
Hafizur Rahman ◽  
...  
Keyword(s):  
Severe Acute Respiratory Syndrome ◽  
Genome Sequence ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
Nasopharyngeal Swab ◽  
Novel Coronavirus

ABSTRACT The complete genome sequence of a novel coronavirus (severe acute respiratory syndrome coronavirus 2 [SARS-CoV-2]) isolate obtained from a nasopharyngeal swab from a patient with COVID-19 in Bangladesh is reported.

scholarly journals Report of SARS-CoV-2 B1.1.7 Lineage in Morocco

2021 ◽  
Vol 10 (16) ◽  
Author(s):  
Mouna Ouadghiri ◽  
Tarik Aanniz ◽  
Abdelomunim Essabbar ◽  
Myriam Seffar ◽  
Hakima Kabbaj ◽  
...  
Keyword(s):  
Severe Acute Respiratory Syndrome ◽  
Female Patient ◽  
Genome Sequence ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
Clinical Sample ◽  
Genetic Variations ◽  
Nasopharyngeal Swab

ABSTRACT Here, we report the near-complete genome sequence and the genetic variations of a clinical sample of severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) harboring the N501Y mutation assigned to the B.1.1.7 lineage. The sample was collected from a nasopharyngeal swab of a female patient from Temara, Morocco, and the sequencing was done using Ion S5 technology.

scholarly journals Coding-Complete Genome Sequence of SARS-CoV-2 Isolate from Bangladesh by Sanger Sequencing

2020 ◽  
Vol 9 (28) ◽  
Author(s):  
M. Moniruzzaman ◽  
Mohammad Uzzal Hossain ◽  
M. Nazrul Islam ◽  
M. Hadisur Rahman ◽  
Irfan Ahmed ◽  
...  
Keyword(s):  
Severe Acute Respiratory Syndrome ◽  
Female Patient ◽  
Genome Sequence ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
Sanger Sequencing

ABSTRACT A coding-complete genome sequence of a severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) isolate was revealed. The sample for the virus was isolated from a female patient from Dhaka, Bangladesh, suffering from coronavirus disease-2019 (COVID-19).

scholarly journals Complete Genome Sequence of the First Isolate of Hibiscus Latent Singapore Virus Detected in Japan

2018 ◽  
Vol 6 (7) ◽  
Author(s):  
Tetsuya Yoshida ◽  
Yugo Kitazawa ◽  
Yutaro Neriya ◽  
Naoi Hosoe ◽  
Yuji Fujimoto ◽  
...  
Keyword(s):  
Amino Acid ◽  
Genome Sequence ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
Nucleotide Identity ◽  
Japanese Isolate ◽  
Encoded Proteins

ABSTRACT The complete genome sequence of the first Japanese isolate of hibiscus latent Singapore virus (HLSV-J) was determined. The genomes of HLSV-J and a reported isolate from Singapore had only 86.7% nucleotide identity, while the encoded proteins shared amino acid identities of more than 95%.

scholarly journals Complete Genome Sequence of Porcine Deltacoronavirus Strain CH/JXJGS01/2016, Isolated in Jiangxi Province, China, 2016

2017 ◽  
Vol 5 (34) ◽  
Author(s):  
Min Zhang ◽  
Yu Ye ◽  
Wang Gong ◽  
Nannan Guo ◽  
Fanfan Zhang ◽  
...  
Keyword(s):  
Phylogenetic Analysis ◽  
Amino Acid ◽  
Genome Sequence ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
Jiangxi Province ◽  
Accession Number ◽  
Chinese Strain

ABSTRACT The complete genome sequence of a variant of porcine deltacoronavirus, isolated from a diarrheal piglet and designated CH/JXJGS01/2016, was sequenced and analyzed. Phylogenetic analysis demonstrated that CH/JXJGS01/2016 shares the highest nucleotide and amino acid identities with the Chinese strain NH (GenBank accession number KU981059).

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