scholarly journals Genome Sequence of a SARS-CoV-2 P.1 Variant of Concern (20J/501Y.V3) from Bangladesh

2021 ◽  
Vol 10 (27) ◽  
Author(s):  
M. Murshed Hasan Sarkar ◽  
Mohammad Fazle Alam Rabbi ◽  
Shahina Akter ◽  
Tanjina Akhtar Banu ◽  
Barna Goswami ◽  
...  
Keyword(s):  
Phylogenetic Analysis ◽  
Severe Acute Respiratory Syndrome ◽  
Genome Sequence ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
Travel History ◽  
Oropharyngeal Swab ◽  
Swab Specimen

This study reports the coding-complete genome sequence, with variant identifications and phylogenetic analysis, of a severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) P.1 variant (20J/501Y.V3), obtained from an oropharyngeal swab specimen from a female Bangladeshi patient diagnosed with coronavirus disease 2019 (COVID-19) with no travel history.

scholarly journals Complete Genome Sequence of a 2019 Novel Coronavirus (SARS-CoV-2) Strain Isolated in Nepal

2020 ◽  
Vol 9 (11) ◽  
Author(s):  
Ranjit Sah ◽  
Alfonso J. Rodriguez-Morales ◽  
Runa Jha ◽  
Daniel K. W. Chu ◽  
Haogao Gu ◽  
...  
Keyword(s):  
Severe Acute Respiratory Syndrome ◽  
Genome Sequence ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
Oropharyngeal Swab ◽  
Novel Coronavirus ◽  
Swab Specimen

A complete genome sequence was obtained for a severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) strain isolated from an oropharyngeal swab specimen of a Nepalese patient with coronavirus disease 2019 (COVID-19), who had returned to Nepal after traveling to Wuhan, China.

scholarly journals Complete Genome Sequence of a 2019 Novel Coronavirus (SARS-CoV-2) Strain Causing a COVID-19 Case in Morocco

2020 ◽  
Vol 9 (27) ◽  
Author(s):  
Sanaâ Lemriss ◽  
Amal Souiri ◽  
Narjis Amar ◽  
Nabil Lemzaoui ◽  
Omar Mestoui ◽  
...  
Keyword(s):  
Severe Acute Respiratory Syndrome ◽  
Genome Sequence ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
Nasopharyngeal Swab ◽  
Novel Coronavirus ◽  
Swab Specimen ◽  
Moroccan Patient

ABSTRACT Here, we report a complete genome sequence obtained for a novel severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) strain isolated from a nasopharyngeal swab specimen of a Moroccan patient with coronavirus disease 2019 (COVID-19).

scholarly journals Identification of a SARS-CoV-2 Lineage B1.1.7 Virus in New York following Return Travel from the United Kingdom

2021 ◽  
Vol 10 (9) ◽  
Author(s):  
Leonardo C. Caserta ◽  
Patrick K. Mitchell ◽  
Elizabeth Plocharczyk ◽  
Diego G. Diel
Keyword(s):  
New York ◽  
United Kingdom ◽  
Severe Acute Respiratory Syndrome ◽  
Health Systems ◽  
Genome Sequence ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
Travel History ◽  
Cornell University ◽  
The United Kingdom

ABSTRACT Here, we report the identification and coding-complete genome sequence of a severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) strain (NYI.B1-7.01-21) obtained from a patient with symptoms of COVID-19 who had a recent travel history to the United Kingdom. The sample was tested by the Cayuga Health Systems laboratory as part of New York State’s travel testing guidance and was sequenced at Cornell University after testing positive.

scholarly journals Complete Genome Sequence of a SARS-CoV-2 Strain Isolated in Northern Germany

2020 ◽  
Vol 9 (23) ◽  
Author(s):  
Susanne Pfefferle ◽  
Jiabin Huang ◽  
Dominik Nörz ◽  
Daniela Indenbirken ◽  
Marc Lütgehetmann ◽  
...  
Keyword(s):  
Severe Acute Respiratory Syndrome ◽  
Female Patient ◽  
Genome Sequence ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
Swab Sample ◽  
Northern Germany ◽  
Oropharyngeal Swab

ABSTRACT Here, we describe the complete genome sequence of a severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) strain isolated from an oropharyngeal swab sample from a female patient with COVID-19 who was infected in Hamburg, northern Germany.

scholarly journals Genome Sequencing of the SARS-CoV-2 Delta (B.1.617.2) Variant of Concern Detected in Bangladesh

2021 ◽  
Vol 10 (48) ◽  
Author(s):  
Tanjina Akhtar Banu ◽  
M. Murshed Hasan Sarkar ◽  
Shahina Akter ◽  
Barna Goswami ◽  
Iffat Jahan ◽  
...  
Keyword(s):  
Phylogenetic Analysis ◽  
Severe Acute Respiratory Syndrome ◽  
Genome Sequencing ◽  
Genome Sequence ◽  
Immune Evasion ◽  
Complete Genome Sequence ◽  
Complete Genome

We report the near-complete genome sequence and phylogenetic analysis of a severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) Delta variant (B.1.617.2) strain. This variant is associated with increased transmission and immune evasion.

scholarly journals Near-Complete Genome Sequence of a SARS-CoV-2 VOC 202012/01 Strain in Peru

2021 ◽  
Vol 10 (12) ◽  
Author(s):  
C. Padilla-Rojas ◽  
L. Barcena-Flores ◽  
K. Vega-Chozo ◽  
M. Galarza-Perez ◽  
H. Bailon-Calderon ◽  
...  
Keyword(s):  
Severe Acute Respiratory Syndrome ◽  
Genome Sequence ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
Swab Sample ◽  
Oropharyngeal Swab

ABSTRACT A near-complete genome sequence was obtained for a novel severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) variant of concern (VOC) 202012/01 strain obtained from an oropharyngeal swab sample from a Peruvian patient with coronavirus syndrome who had contact with an individual who had recently returned from England.

scholarly journals Coding-Complete Genome Sequence and Phylogenetic Relatedness of a SARS-CoV-2 Strain Detected in March 2020 in Cameroon

2021 ◽  
Vol 10 (10) ◽  
Author(s):  
Richard Njouom ◽  
Serge Alain Sadeuh-Mba ◽  
Jules Tchatchueng ◽  
Moussa Moïse Diagne ◽  
Ndongo Dia ◽  
...  
Keyword(s):  
Phylogenetic Analysis ◽  
Severe Acute Respiratory Syndrome ◽  
Genome Sequence ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
Old French ◽  
Phylogenetic Relatedness ◽  
French Patient

ABSTRACT We describe the coding-complete genome sequence of a severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) strain obtained in Cameroon from a 58-year-old French patient who arrived from France on 24 February 2020. Phylogenetic analysis showed that this virus, named hCoV-19/Cameroon/1958-CMR-YAO/2020, belongs to lineage B.1.5 and is closely related to an isolate from France.

scholarly journals First Report of a SARS-CoV-2 Genome Sequence with a Spike His69-Val70 Deletion and an Asn439Lys Mutation in Morocco

2021 ◽  
Vol 10 (11) ◽  
Author(s):  
Tarik Aanniz ◽  
Mouna Ouadghiri ◽  
Mohammed Amine Bendahou ◽  
Mohammed Walid Chemao-Elfihri ◽  
Mohamed Chenaoui ◽  
...  
Keyword(s):  
Severe Acute Respiratory Syndrome ◽  
Male Patient ◽  
Genome Sequence ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
Clinical Sample ◽  
Nasopharyngeal Swab ◽  
Ion Torrent ◽  
First Report ◽  
Swab Specimen

ABSTRACT We report the nearly complete genome sequence and the genetic variations of a clinical sample of severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) collected from a nasopharyngeal swab specimen from a male patient from Harhoura-Rabat, Morocco. The sequence, which was obtained using Ion Torrent technology, is valuable as it carries a recently described deletion (His69-Val70) and substitution (Asn439Lys).

scholarly journals Complete Genome Sequence of a SARS-CoV-2 Strain Sampled in Morocco in May 2020, Obtained Using Sanger Sequencing

2021 ◽  
Vol 10 (20) ◽  
Author(s):  
Abderrazak Rfaki ◽  
Nadia Touil ◽  
Mouhssine Hemlali ◽  
Sanaâ Alaoui Amine ◽  
Marouane Melloul ◽  
...  
Keyword(s):  
Amino Acid ◽  
Severe Acute Respiratory Syndrome ◽  
Genome Sequence ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
Sanger Sequencing ◽  
Reference Strain ◽  
Nasopharyngeal Swab ◽  
Amino Acid Substitutions ◽  
Swab Specimen

ABSTRACT The complete genome sequence of a severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) strain was obtained. The strain was isolated from a nasopharyngeal swab specimen from a female patient in Rabat, Morocco, with coronavirus disease 2019 (COVID-19). This strain belongs to clade 20A and has 12 mutations and 8 amino acid substitutions compared to the reference strain Wuhan/Hu-1/2019.

scholarly journals Complete Genome Sequence of Porcine Deltacoronavirus Strain CH/JXJGS01/2016, Isolated in Jiangxi Province, China, 2016

2017 ◽  
Vol 5 (34) ◽  
Author(s):  
Min Zhang ◽  
Yu Ye ◽  
Wang Gong ◽  
Nannan Guo ◽  
Fanfan Zhang ◽  
...  
Keyword(s):  
Phylogenetic Analysis ◽  
Amino Acid ◽  
Genome Sequence ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
Jiangxi Province ◽  
Accession Number ◽  
Chinese Strain

ABSTRACT The complete genome sequence of a variant of porcine deltacoronavirus, isolated from a diarrheal piglet and designated CH/JXJGS01/2016, was sequenced and analyzed. Phylogenetic analysis demonstrated that CH/JXJGS01/2016 shares the highest nucleotide and amino acid identities with the Chinese strain NH (GenBank accession number KU981059).

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