scholarly journals First Report of a SARS-CoV-2 Genome Sequence with a Spike His69-Val70 Deletion and an Asn439Lys Mutation in Morocco

2021 ◽  
Vol 10 (11) ◽  
Author(s):  
Tarik Aanniz ◽  
Mouna Ouadghiri ◽  
Mohammed Amine Bendahou ◽  
Mohammed Walid Chemao-Elfihri ◽  
Mohamed Chenaoui ◽  
...  
Keyword(s):  
Severe Acute Respiratory Syndrome ◽  
Male Patient ◽  
Genome Sequence ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
Clinical Sample ◽  
Nasopharyngeal Swab ◽  
Ion Torrent ◽  
First Report ◽  
Swab Specimen

ABSTRACT We report the nearly complete genome sequence and the genetic variations of a clinical sample of severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) collected from a nasopharyngeal swab specimen from a male patient from Harhoura-Rabat, Morocco. The sequence, which was obtained using Ion Torrent technology, is valuable as it carries a recently described deletion (His69-Val70) and substitution (Asn439Lys).

scholarly journals Complete Genome Sequence of a 2019 Novel Coronavirus (SARS-CoV-2) Strain Causing a COVID-19 Case in Morocco

2020 ◽  
Vol 9 (27) ◽  
Author(s):  
Sanaâ Lemriss ◽  
Amal Souiri ◽  
Narjis Amar ◽  
Nabil Lemzaoui ◽  
Omar Mestoui ◽  
...  
Keyword(s):  
Severe Acute Respiratory Syndrome ◽  
Genome Sequence ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
Nasopharyngeal Swab ◽  
Novel Coronavirus ◽  
Swab Specimen ◽  
Moroccan Patient

ABSTRACT Here, we report a complete genome sequence obtained for a novel severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) strain isolated from a nasopharyngeal swab specimen of a Moroccan patient with coronavirus disease 2019 (COVID-19).

scholarly journals Report of SARS-CoV-2 B1.1.7 Lineage in Morocco

2021 ◽  
Vol 10 (16) ◽  
Author(s):  
Mouna Ouadghiri ◽  
Tarik Aanniz ◽  
Abdelomunim Essabbar ◽  
Myriam Seffar ◽  
Hakima Kabbaj ◽  
...  
Keyword(s):  
Severe Acute Respiratory Syndrome ◽  
Female Patient ◽  
Genome Sequence ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
Clinical Sample ◽  
Genetic Variations ◽  
Nasopharyngeal Swab

ABSTRACT Here, we report the near-complete genome sequence and the genetic variations of a clinical sample of severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) harboring the N501Y mutation assigned to the B.1.1.7 lineage. The sample was collected from a nasopharyngeal swab of a female patient from Temara, Morocco, and the sequencing was done using Ion S5 technology.

scholarly journals Complete Genome Sequence of a SARS-CoV-2 Strain Sampled in Morocco in May 2020, Obtained Using Sanger Sequencing

2021 ◽  
Vol 10 (20) ◽  
Author(s):  
Abderrazak Rfaki ◽  
Nadia Touil ◽  
Mouhssine Hemlali ◽  
Sanaâ Alaoui Amine ◽  
Marouane Melloul ◽  
...  
Keyword(s):  
Amino Acid ◽  
Severe Acute Respiratory Syndrome ◽  
Genome Sequence ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
Sanger Sequencing ◽  
Reference Strain ◽  
Nasopharyngeal Swab ◽  
Amino Acid Substitutions ◽  
Swab Specimen

ABSTRACT The complete genome sequence of a severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) strain was obtained. The strain was isolated from a nasopharyngeal swab specimen from a female patient in Rabat, Morocco, with coronavirus disease 2019 (COVID-19). This strain belongs to clade 20A and has 12 mutations and 8 amino acid substitutions compared to the reference strain Wuhan/Hu-1/2019.

scholarly journals Genome Sequence of a SARS-CoV-2 P.1 Variant of Concern (20J/501Y.V3) from Bangladesh

2021 ◽  
Vol 10 (27) ◽  
Author(s):  
M. Murshed Hasan Sarkar ◽  
Mohammad Fazle Alam Rabbi ◽  
Shahina Akter ◽  
Tanjina Akhtar Banu ◽  
Barna Goswami ◽  
...  
Keyword(s):  
Phylogenetic Analysis ◽  
Severe Acute Respiratory Syndrome ◽  
Genome Sequence ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
Travel History ◽  
Oropharyngeal Swab ◽  
Swab Specimen

This study reports the coding-complete genome sequence, with variant identifications and phylogenetic analysis, of a severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) P.1 variant (20J/501Y.V3), obtained from an oropharyngeal swab specimen from a female Bangladeshi patient diagnosed with coronavirus disease 2019 (COVID-19) with no travel history.

scholarly journals Coding-Complete Genome Sequence of a SARS-CoV-2 Strain Isolated in Gilgit, Pakistan

2021 ◽  
Vol 10 (13) ◽  
Author(s):  
Aneela Javed ◽  
Saifullah Khan Niazi ◽  
Eijaz Ghani ◽  
Maham Yamin ◽  
Muhammad Saqib ◽  
...  
Keyword(s):  
Severe Acute Respiratory Syndrome ◽  
Genome Sequence ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
Nasopharyngeal Swab

ABSTRACT Here, we report the coding-complete genome sequence of a severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) isolate obtained from a nasopharyngeal swab from the first patient with COVID-19 in Gilgit, Pakistan.

scholarly journals Complete Genome Sequence of a 2019 Novel Coronavirus (SARS-CoV-2) Strain Isolated in Nepal

2020 ◽  
Vol 9 (11) ◽  
Author(s):  
Ranjit Sah ◽  
Alfonso J. Rodriguez-Morales ◽  
Runa Jha ◽  
Daniel K. W. Chu ◽  
Haogao Gu ◽  
...  
Keyword(s):  
Severe Acute Respiratory Syndrome ◽  
Genome Sequence ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
Oropharyngeal Swab ◽  
Novel Coronavirus ◽  
Swab Specimen

A complete genome sequence was obtained for a severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) strain isolated from an oropharyngeal swab specimen of a Nepalese patient with coronavirus disease 2019 (COVID-19), who had returned to Nepal after traveling to Wuhan, China.

scholarly journals Complete Genome Sequence of a Novel Coronavirus (SARS-CoV-2) Isolate from Bangladesh

2020 ◽  
Vol 9 (24) ◽  
Author(s):  
Senjuti Saha ◽  
Roly Malaker ◽  
Mohammad Saiful Islam Sajib ◽  
Md Hasanuzzaman ◽  
Hafizur Rahman ◽  
...  
Keyword(s):  
Severe Acute Respiratory Syndrome ◽  
Genome Sequence ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
Nasopharyngeal Swab ◽  
Novel Coronavirus

ABSTRACT The complete genome sequence of a novel coronavirus (severe acute respiratory syndrome coronavirus 2 [SARS-CoV-2]) isolate obtained from a nasopharyngeal swab from a patient with COVID-19 in Bangladesh is reported.

scholarly journals Coding-Complete Sequence of a SARS-CoV-2 B.1.1.25 Lineage Obtained from an 8-Day-Old Deceased Neonate

2021 ◽  
Vol 10 (35) ◽  
Author(s):  
Muntasir Alam ◽  
M. Ishrat Jahan ◽  
Shafina Jahan ◽  
Dianna M. Blau ◽  
Afruna Rahman ◽  
...  
Keyword(s):  
Genome Sequence ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
Complete Sequence ◽  
Nasopharyngeal Swab

We report the complete genome sequence of a SARS-CoV-2 strain, hCoV-19/Bangladesh/icddrb-CHAMPS-BDAA02205/2021, obtained from a nasopharyngeal swab from a deceased neonate from Faridpur, Bangladesh. The strain belongs to lineage B.1.1.25 (a Bangladeshi lineage) but contains some notable mutations similar to those in lineage B.1.1.7.

scholarly journals Complete Genome Sequences of Lineage IV Peste des Petits Ruminants Viruses from the Indian Subcontinent

2015 ◽  
Vol 3 (5) ◽  
Author(s):  
Aliyu Abdullahi Masdooq ◽  
Rahul Mohanchandra Pawar ◽  
Aravindh Babu R. Parthiban ◽  
K. Ragavendhar ◽  
G. Sundarapandian ◽  
...  
Keyword(s):  
Genome Sequence ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
Indian Subcontinent ◽  
Peste Des Petits Ruminants ◽  
Genome Sequences ◽  
First Report ◽  
Lineage Iv

The complete genome sequences of two virulent lineage IV peste des petits ruminants viruses (PPRVs) isolated from clinically infected goats in the Indian subcontinent are reported here. This is the first report of a complete genome sequence of a virulent PPRV isolate from India in recent decades.

scholarly journals Complete Genome Sequence of a Fusarium graminearum Double-Stranded RNA Virus in a Newly Proposed Family, Alternaviridae

2018 ◽  
Vol 6 (8) ◽  
Author(s):  
Hao He ◽  
Xiaoguang Chen ◽  
Pengfei Li ◽  
Dewen Qiu ◽  
Lihua Guo
Keyword(s):  
Phylogenetic Analysis ◽  
Fusarium Graminearum ◽  
Genome Sequence ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
Rna Virus ◽  
Phytopathogenic Fungus ◽  
Double Stranded Rna ◽  
First Report ◽  
The Family

ABSTRACT We describe here a double-stranded RNA mycovirus, termed Fusarium graminearum alternavirus 1 (FgAV1/AH11), from the isolate AH11 of the phytopathogenic fungus F. graminearum . Phylogenetic analysis showed that FgAV1/AH11 belongs to a newly proposed family, Alternaviridae . This is the first report of a mycovirus in the family Alternaviridae that infects F. graminearum .

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