scholarly journals Genome Sequence of the Radiation-Resistant Bacterium Deinococcus radiophilus ATCC 27603T

2019 ◽  
Vol 8 (30) ◽  
Author(s):  
Claudia R. Maynard ◽  
Kyle S. MacLea
Keyword(s):  
Radiation Exposure ◽  
Genome Size ◽  
Genome Sequence ◽  
Genome Assembly ◽  
Resistant Bacterium ◽  
Content Type ◽  
A Genome ◽  
Associated Proteins ◽  
Radiation Resistant ◽  
Deinococcus Radiophilus

The pigmented bacterium Deinococcus radiophilus, which is highly resistant to radiation exposure, was first isolated from irradiated lizardfish. We report a genome assembly of D. radiophilus UWO 1055T (=ATCC 27603T), with a predicted genome size of 2.7 Mbp (62.66% G+C content). A number of CRISPR-associated proteins and two CRISPR arrays were identified.

scholarly journals Highly Contiguous Nanopore Genome Assembly of Chlamydomonas reinhardtii CC-1690

2020 ◽  
Vol 9 (37) ◽  
Author(s):  
Samuel O’Donnell ◽  
Frederic Chaux ◽  
Gilles Fischer
Keyword(s):  
Chlamydomonas Reinhardtii ◽  
Genome Size ◽  
Genome Assembly ◽  
Reference Genome ◽  
De Novo ◽  
Content Type ◽  
Oxford Nanopore ◽  
A Genome ◽  
Reference Quality

ABSTRACT The current Chlamydomonas reinhardtii reference genome remains fragmented due to gaps stemming from large repetitive regions. To overcome the vast majority of these gaps, publicly available Oxford Nanopore Technology data were used to create a new reference-quality de novo genome assembly containing only 21 contigs, 30/34 telomeric ends, and a genome size of 111 Mb.

scholarly journals Draft Genome Sequence of Lactobacillus paraplantarum OSY-TC318, a Producer of the Novel Lantibiotic Paraplantaracin TC318

2019 ◽  
Vol 8 (19) ◽  
Author(s):  
Walaa E. Hussein ◽  
En Huang ◽  
Ismet Ozturk ◽  
Ahmed E. Yousef
Keyword(s):  
Genome Size ◽  
Genome Sequence ◽  
Draft Genome ◽  
Gc Content ◽  
Peptide Sequencing ◽  
Draft Genome Sequence ◽  
The Novel ◽  
Content Type ◽  
A Genome ◽  
Lactobacillus Paraplantarum

Lactobacillus paraplantarum OSY-TC318 was isolated from Turkish Tulum cheese and found to produce a potent anti-Gram-positive peptide. Sequencing of the OSY-TC318 genome revealed a genome size of 3,587,488 bp and an average GC content of 43.4%.

scholarly journals Draft Genome Sequence of Xanthobacter tagetidis ATCC 700314T

2019 ◽  
Vol 8 (28) ◽  
Author(s):  
Syeda A. Fatima ◽  
Abigail E. Goen ◽  
Kyle S. MacLea
Keyword(s):  
Genome Sequence ◽  
Genome Assembly ◽  
Draft Genome ◽  
Draft Genome Sequence ◽  
Gram Negative ◽  
Content Type ◽  
Degrading Bacterium ◽  
A Genome ◽  
Autotrophic Bacterium

Xanthobacter tagetidis is a thiophene-degrading bacterium associated with root balls of the plant genus Tagetes, which includes marigolds. It is a Gram-negative facultatively autotrophic bacterium with pleomorphic morphology exhibiting bent and branching rods. From strain TagT2CT (= ATCC 700314T), we report a genome assembly of 4,945,221 bp and a 69.5% G+C content.

scholarly journals Complete Genome Sequence of Adlercreutzia equolifaciens subsp. celatus DSM 18785

2021 ◽  
Vol 10 (19) ◽  
Author(s):  
Haruno Takahashi ◽  
Jiayue Yang ◽  
Hiromitsu Yamamoto ◽  
Shinji Fukuda ◽  
Kazuharu Arakawa
Keyword(s):  
Genome Size ◽  
Genome Sequence ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
Content Type ◽  
Obligately Anaerobic ◽  
A Genome

ABSTRACT Adlercreutzia equolifaciens subsp. celatus DSM 18785 was isolated from the cecal contents of a rat and is an obligately anaerobic equol-producing bacterium. Here, we report the finished and annotated genome sequence of this organism, which has a genome size of 2,929,991 bp and a G+C content of 63.2%.

scholarly journals Draft Genome Sequence of the Salt Water Bacterium Oceanospirillum linum ATCC 11336T

2017 ◽  
Vol 5 (21) ◽  
Author(s):  
Ariel M. Trachtenberg ◽  
Joshua G. Carney ◽  
Joshua D. Linnane ◽  
Bruce A. Rheaume ◽  
Natalie L. Pitts ◽  
...  
Keyword(s):  
Genome Size ◽  
Genome Sequence ◽  
Salt Water ◽  
Long Island ◽  
Draft Genome ◽  
Long Island Sound ◽  
Coding Sequences ◽  
Content Type ◽  
A Genome ◽  
Island Sound

ABSTRACT Oceanospirillum linum ATCC 11336T is an aerobic, bipolar-tufted gammaproteobacterium first isolated in the Long Island Sound in the 1950s. This announcement offers a genome sequence for O. linum ATCC 11336T, which has a predicted genome size of 3,782,189 bp (49.13% G+C content) containing 3,540 genes and 3,361 coding sequences.

scholarly journals Genome Sequence Analysis of Enterobacter sp. C6, Found in the Pitcher Fluids of Sarracenia rosea

2020 ◽  
Vol 9 (3) ◽  
Author(s):  
Shumeng Zhang ◽  
Srinivasa R. Chaluvadi ◽  
Jeffrey L. Bennetzen
Keyword(s):  
Sequence Analysis ◽  
Genome Sequence ◽  
Genome Assembly ◽  
Illumina Platform ◽  
Pitcher Plant ◽  
Genome Sequence Analysis ◽  
Content Type ◽  
A Genome ◽  
Protein Encoding ◽  
Rna Genes

An unclassified Enterobacter strain was isolated from the pitcher fluids of a Sarracenia rosea pitcher plant growing at Splinter Hill Bog in Alabama. Its genome was sequenced using the Illumina platform. A genome assembly of 4,673,815 bp was obtained. In total, 4,646 protein-encoding sequences and 72 RNA genes are predicted from this assembly.

scholarly journals Complete Genome Sequence of the Highly Adhesive Bacterium Acinetobacter sp. Strain Tol 5

2021 ◽  
Vol 10 (35) ◽  
Author(s):  
Masahito Ishikawa ◽  
Katsutoshi Hori
Keyword(s):  
Genome Size ◽  
Genome Sequence ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
Environmental Applications ◽  
Negative Bacterium ◽  
Gram Negative ◽  
Content Type ◽  
A Genome ◽  
Acinetobacter Sp

Acinetobacter sp. strain Tol 5 is a nonpathogenic Gram-negative bacterium with biotechnological and environmental applications. Here, we report the complete genome sequence of Acinetobacter sp. strain Tol 5, which has a genome size of 4,799,506 bp and a G+C content of 38.1%.

scholarly journals Draft Genome Sequence of a Leptospira kirschneri Serovar Mozdok Type 2 Strain Isolated from a Horse in Portugal

2021 ◽  
Vol 10 (28) ◽  
Author(s):  
João Inácio ◽  
Antonio Muñoz-Mérida ◽  
Ahmed A. Ahmed ◽  
Teresa Rocha ◽  
João Rodrigo Mesquita ◽  
...  
Keyword(s):  
Genome Size ◽  
Clinical Outcomes ◽  
Genome Sequence ◽  
Draft Genome ◽  
Draft Genome Sequence ◽  
Content Type ◽  
A Genome

Leptospira kirschneri is an agent causing leptospirosis in animals and humans. We report the draft genome sequence of Leptospira kirschneri serovar Mozdok type 2 strain Horse 112, comprising 485 contigs and having a genome size of 4,301,784 bp. This genome will facilitate studying important mechanisms for clinical outcomes.

scholarly journals Draft Genome Sequence of Dermacoccus nishinomiyaensis TSA37, Isolated from Wood Ash

2019 ◽  
Vol 8 (50) ◽  
Author(s):  
Alexander N. Williams ◽  
Kyle S. MacLea
Keyword(s):  
Human Skin ◽  
Genome Sequence ◽  
Genome Assembly ◽  
Draft Genome ◽  
Wood Ash ◽  
Draft Genome Sequence ◽  
Skin Microbiome ◽  
Wood Pellet ◽  
Content Type ◽  
A Genome

Dermacoccus nishinomiyaensis is a common bacterial resident of the human skin microbiome, among other environments. D. nishinomiyaensis strain TSA37 was isolated from the ash pan of a residential wood pellet stove. A genome assembly of 3,130,592 bp was generated, with an N 50 value of 197,547 bp and a calculated G+C content of 69.01%.

scholarly journals Improved Draft Genome Sequence of a Monoteliosporic Culture of the Karnal Bunt (Tilletia indica) Pathogen of Wheat

2018 ◽  
Vol 6 (20) ◽  
Author(s):  
Anil Kumar ◽  
Pallavi Mishra ◽  
Ranjeet Maurya ◽  
A. K. Mishra ◽  
Vijai K. Gupta ◽  
...  
Keyword(s):  
Genome Size ◽  
Genome Sequence ◽  
Genome Assembly ◽  
Fungal Pathogen ◽  
Draft Genome ◽  
Karnal Bunt ◽  
Tilletia Indica ◽  
Content Type ◽  
Previous Version ◽  
Draft Genome Assembly

ABSTRACT Karnal bunt of wheat is an internationally quarantined fungal pathogen disease caused by Tilletia indica and affects the international commercial seed trade of wheat. We announce here the first improved draft genome assembly of a monoteliosporic culture of the Tilletia indica fungus, consisting of 787 scaffolds with an approximate total genome size of 31.83 Mbp, which is more accurate and near to complete than the previous version.

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