scholarly journals Genome Sequence Analysis of Enterobacter sp. C6, Found in the Pitcher Fluids of Sarracenia rosea

2020 ◽  
Vol 9 (3) ◽  
Author(s):  
Shumeng Zhang ◽  
Srinivasa R. Chaluvadi ◽  
Jeffrey L. Bennetzen
Keyword(s):  
Sequence Analysis ◽  
Genome Sequence ◽  
Genome Assembly ◽  
Illumina Platform ◽  
Pitcher Plant ◽  
Genome Sequence Analysis ◽  
Content Type ◽  
A Genome ◽  
Protein Encoding ◽  
Rna Genes

An unclassified Enterobacter strain was isolated from the pitcher fluids of a Sarracenia rosea pitcher plant growing at Splinter Hill Bog in Alabama. Its genome was sequenced using the Illumina platform. A genome assembly of 4,673,815 bp was obtained. In total, 4,646 protein-encoding sequences and 72 RNA genes are predicted from this assembly.

scholarly journals Draft Genome Sequence of a Serratia marcescens Strain Isolated from the Pitcher Fluids of a Sarracenia Pitcher Plant

2020 ◽  
Vol 9 (2) ◽  
Author(s):  
Shumeng Zhang ◽  
Srinivasa R. Chaluvadi ◽  
Jeffrey L. Bennetzen
Keyword(s):  
Serratia Marcescens ◽  
Genome Sequence ◽  
Genome Assembly ◽  
Draft Genome ◽  
Draft Genome Sequence ◽  
Illumina Platform ◽  
Pitcher Plant ◽  
Coding Sequences ◽  
Content Type

The genome of a Serratia marcescens strain (C7) that was found in the pitcher fluids of a Sarracenia rosea pitcher plant was sequenced using the Illumina platform. A 5,543,750-bp genome assembly was obtained. A total of 6,278 coding sequences are predicted from this assembly.

scholarly journals Whole genome sequence analysis of Shigella from Malawi identifies fluoroquinolone resistance

2021 ◽  
Vol 7 (5) ◽  
Author(s):  
George E. Stenhouse ◽  
Khuzwayo C. Jere ◽  
Chikondi Peno ◽  
Rebecca J. Bengtsson ◽  
End Chinyama ◽  
...  
Keyword(s):  
Sequence Analysis ◽  
Antimicrobial Resistance ◽  
Genome Sequence ◽  
Whole Genome Sequence ◽  
Fluoroquinolone Resistance ◽  
Whole Genome ◽  
Genome Sequence Analysis ◽  
Content Type ◽  
Link Type ◽  
Global Priority

Increasing antimicrobial resistance and limited alternative treatments have led to fluoroquinolone-resistant Shigella strain inclusion on the WHO global priority pathogens list. In this study we characterized multiple Shigella isolates from Malawi with whole genome sequence analysis, identifying the acquirable fluoroquinolone resistance determinant qnrS1.

scholarly journals Draft Genome Sequence of Xanthobacter tagetidis ATCC 700314T

2019 ◽  
Vol 8 (28) ◽  
Author(s):  
Syeda A. Fatima ◽  
Abigail E. Goen ◽  
Kyle S. MacLea
Keyword(s):  
Genome Sequence ◽  
Genome Assembly ◽  
Draft Genome ◽  
Draft Genome Sequence ◽  
Gram Negative ◽  
Content Type ◽  
Degrading Bacterium ◽  
A Genome ◽  
Autotrophic Bacterium

Xanthobacter tagetidis is a thiophene-degrading bacterium associated with root balls of the plant genus Tagetes, which includes marigolds. It is a Gram-negative facultatively autotrophic bacterium with pleomorphic morphology exhibiting bent and branching rods. From strain TagT2CT (= ATCC 700314T), we report a genome assembly of 4,945,221 bp and a 69.5% G+C content.

scholarly journals Draft Genome Sequence of the Intimin-Positive Enteropathogenic Escherichia albertii Strain MBT-EA1, Isolated from Lettuce

2018 ◽  
Vol 6 (15) ◽  
pp. e00255-18
Author(s):  
Gregor Fiedler ◽  
Erik Brinks ◽  
Christina Böhnlein ◽  
Gyu-Sung Cho ◽  
Sabrina Koberg ◽  
...  
Keyword(s):  
Sequence Analysis ◽  
Genome Size ◽  
Genome Sequence ◽  
Draft Genome ◽  
Draft Genome Sequence ◽  
Content Type ◽  
Protein Encoding ◽  
Encoding Genes

ABSTRACT The genome of the intimin (eae)-harboring Escherichia albertii strain MBT-EA1, isolated from lettuce in Germany, was sequenced. Sequence analysis showed the assembled draft genome size to be 4,560,948 bp, containing a predicted total of 4,414 protein-encoding genes, 11 rRNAs, and 82 tRNAs. Furthermore, three plasmid sequences were found.

scholarly journals Genome Sequence of Lactobacillus sunkii Strain CG_D

2017 ◽  
Vol 5 (2) ◽  
Author(s):  
Christina Gabris ◽  
Anja Poehlein ◽  
Frank R. Bengelsdorf ◽  
Rolf Daniel ◽  
Peter Dürre
Keyword(s):  
Lactic Acid ◽  
Lactic Acid Bacterium ◽  
Genome Sequence ◽  
Draft Genome ◽  
Gram Positive ◽  
Content Type ◽  
Protein Encoding ◽  
Rna Genes

ABSTRACT Lactobacillus sunkii CG_D is a rod-shaped, Gram-positive, and heterofermentative lactic acid bacterium. The draft genome of L. sunkii strain CG_D comprises 2,794,637 bp with an average G+C content of 42.03%. The genome harbors 2,662 predicted protein-encoding, and 71 RNA genes.

scholarly journals Draft Genome Sequence of Rhizobium sophoriradicis H4, a Nitrogen-Fixing Bacterium Associated with the Leguminous Plant Phaseolus vulgaris on the Coast of Peru

2018 ◽  
Vol 6 (21) ◽  
Author(s):  
Ernesto Ormeño-Orrillo ◽  
Yohana Aguilar-Cuba ◽  
Doris Zúñiga-Dávila
Keyword(s):  
Phaseolus Vulgaris ◽  
Common Bean ◽  
Genome Sequence ◽  
Genome Assembly ◽  
Draft Genome ◽  
Leguminous Plant ◽  
Nitrogen Fixing ◽  
Content Type ◽  
The Common ◽  
Rna Genes

ABSTRACT The genome sequence of Rhizobium sophoriradicis H4, a nitrogen-fixing bacterium isolated from the common bean (Phaseolus vulgaris) in Peru, is reported here. The genome assembly revealed a 6.44-Mbp genome which was distributed into 95 contigs, with N 50 and L 50 values of 293 kbp and 9, respectively. The genome contained 6,312 coding sequence (CDS) genes and 52 RNA genes (49 tRNAs and 3 rRNAs).

scholarly journals Draft Genome Sequence of Enterohemorrhagic Escherichia coli O157:H7 Strain MC2 Isolated from Cattle in France

2017 ◽  
Vol 5 (40) ◽  
Author(s):  
Pauline Auffret ◽  
Audrey Segura ◽  
Yolande Bertin ◽  
Christophe Klopp ◽  
Olivier Bouchez ◽  
...  
Keyword(s):  
Escherichia Coli ◽  
Genome Sequence ◽  
Draft Genome ◽  
Foodborne Pathogen ◽  
Enterohemorrhagic Escherichia Coli ◽  
Draft Genome Sequence ◽  
Content Type ◽  
Protein Encoding ◽  
Encoding Genes ◽  
Rna Genes

ABSTRACT Enterohemorrhagic Escherichia coli (EHEC) with serotype O157:H7 is a major foodborne pathogen. Here, we report the draft genome sequence of EHEC O157:H7 strain MC2 isolated from cattle in France. The assembly contains 5,400,376 bp that encoded 5,914 predicted genes (5,805 protein-encoding genes and 109 RNA genes).

scholarly journals Complete Genome Sequence of a Rhodococcus Species Isolated from the Winter Skate Leucoraja ocellata

2016 ◽  
Vol 4 (5) ◽  
Author(s):  
Julia Wiens ◽  
Ryan Ho ◽  
Dinesh Fernando ◽  
Ayush Kumar ◽  
Peter C. Loewen ◽  
...  
Keyword(s):  
Sequence Analysis ◽  
Genome Sequence ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
Genome Sequence Analysis ◽  
A Genome ◽  
Rhodococcus Species ◽  
Mutualistic Relationship

We report here a genome sequence for Rhodococcus sp. isolate UM008 isolated from the renal/interrenal tissue of the winter skate Leucoraja ocellata . Genome sequence analysis suggests that Rhodococcus bacteria may act in a novel mutualistic relationship with their elasmobranch host, serving as biocatalysts in the steroidogenic pathway of 1α-hydroxycorticosterone.

scholarly journals Draft Genome Sequence of Dermacoccus nishinomiyaensis TSA37, Isolated from Wood Ash

2019 ◽  
Vol 8 (50) ◽  
Author(s):  
Alexander N. Williams ◽  
Kyle S. MacLea
Keyword(s):  
Human Skin ◽  
Genome Sequence ◽  
Genome Assembly ◽  
Draft Genome ◽  
Wood Ash ◽  
Draft Genome Sequence ◽  
Skin Microbiome ◽  
Wood Pellet ◽  
Content Type ◽  
A Genome

Dermacoccus nishinomiyaensis is a common bacterial resident of the human skin microbiome, among other environments. D. nishinomiyaensis strain TSA37 was isolated from the ash pan of a residential wood pellet stove. A genome assembly of 3,130,592 bp was generated, with an N 50 value of 197,547 bp and a calculated G+C content of 69.01%.

scholarly journals Genome Sequence of Staphylococcus aureus Strain CBS2016-05, Isolated from Contaminated Platelet Concentrates in Canada

2021 ◽  
Vol 10 (34) ◽  
Author(s):  
Basit Yousuf ◽  
Annika Flint ◽  
Kelly Weedmark ◽  
Franco Pagotto ◽  
Sandra Ramirez-Arcos
Keyword(s):  
Staphylococcus Aureus ◽  
Sequence Analysis ◽  
Acute Leukemia ◽  
Genome Sequence ◽  
Aureus Strain ◽  
Platelet Concentrates ◽  
Genome Sequence Analysis ◽  
Content Type ◽  
Leukemia Patient ◽  
Acute Leukemia Patient

We present the genome sequence of Staphylococcus aureus strain CBS2016-05, which was isolated from contaminated platelet concentrates by Canadian Blood Services in 2016. This strain caused a septic reaction in an acute leukemia patient. Genome sequence analysis revealed the presence of one chromosome (2,766,936 bp) and one plasmid (36,441 bp).

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