scholarly journals Complete Genome Sequence of Escherichia coli Siphophage Snoke

2019 ◽  
Vol 8 (40) ◽  
Author(s):  
James E. Corban ◽  
Jacob Gramer ◽  
Russell Moreland ◽  
Mei Liu ◽  
Jolene Ramsey
Keyword(s):  
Escherichia Coli ◽  
Genome Sequence ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
Negative Bacterium ◽  
Protein Coding ◽  
Gram Negative ◽  
Content Type ◽  
E Coli ◽  
Protein Coding Genes

Escherichia coli is a Gram-negative bacterium often found in animal intestinal tracts. Here, we present the genome of the Guernseyvirinae-like E. coli 4s siphophage Snoke. The 44.4-kb genome contains 81 protein-coding genes, for which 33 functions were predicted. The capsid morphogenesis gene in Snoke contains a large intein.

scholarly journals Complete Genome Sequence of Escherichia coli Siphophage Sciku

2019 ◽  
Vol 8 (38) ◽  
Author(s):  
Isla Hernandez ◽  
Micah Castillo ◽  
Russell Moreland ◽  
Mei Liu ◽  
Jolene Ramsey
Keyword(s):  
Escherichia Coli ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
Negative Bacterium ◽  
Protein Coding ◽  
Gram Negative ◽  
Content Type ◽  
E Coli ◽  
Protein Coding Genes ◽  
Genome Comparisons

Escherichia coli is a Gram-negative bacterium that is found in humans and animals as both a commensal organism and a pathogen. This report describes the isolation of Sciku, a siphophage infecting E. coli 4s, with 73 protein-coding genes. Genome comparisons suggest that Sciku is related to phages within Guernseyvirinae.

scholarly journals Complete Genome Sequence of Escherichia coli Podophage Penshu1

2019 ◽  
Vol 8 (38) ◽  
Author(s):  
Douglas Pechacek ◽  
Myung Hwangbo ◽  
Russell Moreland ◽  
Mei Liu ◽  
Jolene Ramsey
Keyword(s):  
Escherichia Coli ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
Coliform Bacteria ◽  
Negative Bacterium ◽  
Gram Negative ◽  
Content Type ◽  
E Coli ◽  
Protein Encoding ◽  
Encoding Genes

Escherichia coli 4s is a Gram-negative bacterium found in the equine intestinal ecosystem alongside diverse other coliform bacteria and bacteriophages. This announcement describes the complete genome of the T7-like E. coli 4s podophage Penshu1. From its 39,263-bp genome, 54 protein-encoding genes and a 179-bp terminal repeat were predicted.

scholarly journals Complete Genome Sequence of Serratia Phage Muldoon

2020 ◽  
Vol 9 (1) ◽  
Author(s):  
Soren Campbell ◽  
Cameron Atkison ◽  
Russell Moreland ◽  
Mei Liu ◽  
Jolene Ramsey ◽  
...  
Keyword(s):  
Serratia Marcescens ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
Opportunistic Infections ◽  
Trna Genes ◽  
Negative Bacterium ◽  
Protein Coding ◽  
Gram Negative ◽  
Content Type ◽  
Protein Coding Genes

Serratia marcescens is a ubiquitous Gram-negative bacterium that is linked with emerging opportunistic infections. In this report, we describe the isolation and annotation of an S. marcescens myophage called Muldoon. Related to T4-like phages, such as Serratia phage PS2, Muldoon contains 257 predicted protein-coding genes and 4 tRNA genes.

scholarly journals Complete Genome Sequence of Halomonas meridiana Strain Slthf1, Isolated from a Deep-Sea Thermal Vent

2020 ◽  
Vol 9 (16) ◽  
Author(s):  
Yuka Takahashi ◽  
Haruno Takahashi ◽  
Josephine Galipon ◽  
Kazuharu Arakawa
Keyword(s):  
Genome Sequence ◽  
Complete Genome Sequence ◽  
Deep Sea ◽  
Complete Genome ◽  
Negative Bacterium ◽  
Protein Coding ◽  
Coding Sequences ◽  
Gram Negative ◽  
Content Type

Halomonas meridiana strain Slthf1 (ATCC BAA-801) is a Gram-negative bacterium that was isolated from a thermal vent in 1998. Here, we report the complete genome sequence of this strain, which has a 3.6-Mbp genome, containing 3,400 protein-coding sequences.

scholarly journals Complete Genome Sequence of Escherichia coli Myophage Minorna

2019 ◽  
Vol 8 (23) ◽  
Author(s):  
Katherine Rogers ◽  
Lorna Min ◽  
Heather Newkirk ◽  
Mei Liu ◽  
Jolene Ramsey
Keyword(s):  
Escherichia Coli ◽  
Antibiotic Resistance ◽  
Genome Sequence ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
Negative Bacterium ◽  
Treatment Alternative ◽  
Gram Negative ◽  
Content Type ◽  
Viable Treatment

The Gram-negative bacterium Escherichia coli causes many diseases, and antibiotic resistance has become a problem for their treatment. Bacteriophages may present a viable treatment alternative.

scholarly journals Complete Genome Sequence of Serratia marcescens Siphophage Slocum

2020 ◽  
Vol 9 (1) ◽  
Author(s):  
Jason Snowden ◽  
Heather Newkirk ◽  
Russell Moreland ◽  
Mei Liu ◽  
Jolene Ramsey ◽  
...  
Keyword(s):  
Serratia Marcescens ◽  
Genome Sequence ◽  
Complete Genome Sequence ◽  
Genome Annotation ◽  
Complete Genome ◽  
Opportunistic Pathogen ◽  
Protein Coding ◽  
Gram Negative ◽  
Content Type ◽  
Protein Coding Genes

Serratia marcescens is a ubiquitous Gram-negative opportunistic pathogen. This announcement describes the isolation and genome annotation of S. marcescens T5-like siphophage Slocum. Terminal repeats, 170 protein-coding genes, and 23 tRNAs were predicted in the 112,436-bp Slocum genome.

scholarly journals Complete Genome Sequence of Citrobacter koseri Strain MPUCK001

2020 ◽  
Vol 9 (50) ◽  
Author(s):  
Tomotaka Ohkubo ◽  
Yasuhiko Matsumoto ◽  
Otomi Cho ◽  
Yuki Ogasawara ◽  
Takashi Sugita
Keyword(s):  
Human Skin ◽  
Genome Sequence ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
Intestinal Tract ◽  
Negative Bacterium ◽  
Protein Coding ◽  
Coding Sequences ◽  
Gram Negative ◽  
Content Type

Citrobacter koseri, an aerobic Gram-negative bacterium, is isolated from the human skin and intestinal tract. Here, we report the complete genome sequence of Citrobacter koseri strain MPUCK001, which has a 4.9-Mbp genome, containing 4,536 protein-coding sequences.

scholarly journals Complete Genome Sequence of Stenotrophomonas maltophilia Siphophage Salva

2021 ◽  
Vol 10 (10) ◽  
Author(s):  
Brandi Jefferson ◽  
Guichun Yao ◽  
James Clark ◽  
Tram Le ◽  
Carlos Gonzalez ◽  
...  
Keyword(s):  
Genome Sequence ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
Stenotrophomonas Maltophilia ◽  
Protein Coding ◽  
Gram Negative ◽  
Content Type ◽  
Putative Protein ◽  
Protein Coding Genes

ABSTRACT Stenotrophomonas maltophilia is a Gram-negative pathogen causing severe and often refractory illnesses such as pneumonia and bacteremia. We present the genome of phage Salva, a novel S. maltophilia phage that is not closely related to any phages currently deposited in GenBank. The genome is 60,789 bp, containing 102 putative protein-coding genes.

scholarly journals Complete Genome Sequence of Stenotrophomonas maltophilia Podophage Ponderosa

2019 ◽  
Vol 8 (39) ◽  
Author(s):  
Alejandra Marquez ◽  
Heather Newkirk ◽  
Russell Moreland ◽  
Carlos F. Gonzalez ◽  
Mei Liu ◽  
...  
Keyword(s):  
Complete Genome Sequence ◽  
Complete Genome ◽  
Stenotrophomonas Maltophilia ◽  
Opportunistic Pathogen ◽  
Multidrug Resistant ◽  
Negative Bacterium ◽  
Protein Coding ◽  
Gram Negative ◽  
Content Type ◽  
Protein Coding Genes

Stenotrophomonas maltophilia is a Gram-negative bacterium that is emerging as a multidrug-resistant global opportunistic pathogen. Here, we describe the genome of the T7-like S. maltophilia podophage Ponderosa, with 54 predicted protein-coding genes and a 493-bp terminal repeat.

scholarly journals Complete Genome Sequence of Escherichia coli Phage Pisces

2019 ◽  
Vol 8 (39) ◽  
Author(s):  
Haydee Diaz ◽  
Kristin Graham ◽  
Russell Moreland ◽  
Mei Liu ◽  
Jolene Ramsey
Keyword(s):  
Escherichia Coli ◽  
Genome Sequence ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
Protein Coding ◽  
Content Type ◽  
Protein Coding Genes ◽  
Wastewater Samples ◽  
Escherichia Coli Phage ◽  
Predicted Function

Podophage Pisces was isolated against Escherichia coli strain 4s from wastewater samples. Pisces is a T7-like phage, and all 49 predicted protein-coding genes in it are present on a single strand and are surrounded by 190-bp terminal repeats. Due to its similarity to other T7-like phages, 61% of Pisces genes were assigned a predicted function.

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