scholarly journals Complete Genome Sequence of Pantoea agglomerans TH81, Isolated from a Permafrost Thaw Gradient

2019 ◽  
Vol 8 (1) ◽  
Author(s):  
Jennie Humphrey ◽  
Taylor Seitz ◽  
Tracie Haan ◽  
Anne-Lise Ducluzeau ◽  
Devin M. Drown
Keyword(s):  
Boreal Forest ◽  
Forest Soil ◽  
Genome Sequence ◽  
Genome Assembly ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
Pantoea Agglomerans ◽  
Content Type ◽  
Permafrost Thaw

In this report, we describe the complete genome assembly of a Pantoea agglomerans isolate, TH81, collected from a boreal forest soil associated with permafrost thaw. Using both Nanopore and Illumina sequences, we assembled four circular contigs totaling 4,983,504 bp (N 50, 4,127,869 bp), a complete chromosome with three plasmids.

scholarly journals Complete Genome Sequence of Bacillus mycoides TH26, Isolated from a Permafrost Thaw Gradient

2019 ◽  
Vol 8 (24) ◽  
Author(s):  
Tracie Haan ◽  
Scout McDougall ◽  
Devin M. Drown
Keyword(s):  
Boreal Forest ◽  
Forest Soil ◽  
Genome Assembly ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
Library Preparation ◽  
Bacillus Mycoides ◽  
Content Type ◽  
Permafrost Thaw ◽  
Long Read

Here, we describe the complete genome assembly of a Bacillus mycoides isolate collected from a boreal forest soil associated with permafrost thaw. Using only long-read Nanopore sequences and VolTRAX library preparation, we assembled two circular contigs totaling 5,789,722 bp (N 50, 5,306,036), a complete chromosome with one plasmid.

scholarly journals Complete Genome Sequence of Bacillus velezensis Strain DKU_NT_04, Isolated from a Traditional Korean Food Made from Soybeans (Cheonggukjang)

2020 ◽  
Vol 9 (24) ◽  
Author(s):  
Man-Seok Bang ◽  
Hee-Won Jeong ◽  
Yea-Jin Lee ◽  
Sang-Cheol Lee ◽  
Gi Soo Lee ◽  
...  
Keyword(s):  
Genome Sequence ◽  
Genome Assembly ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
Bacillus Velezensis ◽  
Coding Sequences ◽  
Content Type ◽  
Fermented Soybean ◽  
Soybean Paste ◽  
Korean Food

ABSTRACT In the present work, we report the complete genome sequence of Bacillus velezensis DKU_NT_04, isolated from cheonggukjang, which is a traditional Korean fermented soybean paste. The final genome assembly consists of a 4.328-Mbp chromosome with 4,134 coding sequences and a G+C content of 45.21%.

scholarly journals Complete Genome Sequence of Buffalopox Virus

2018 ◽  
Vol 6 (21) ◽  
Author(s):  
Babak Afrough ◽  
Afia Zafar ◽  
Rumina Hasan ◽  
Roger Hewson
Keyword(s):  
Phylogenetic Analysis ◽  
Genome Sequence ◽  
Genome Assembly ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
Virus Isolate ◽  
Protein Coding ◽  
Coding Sequences ◽  
Content Type

ABSTRACT The first complete genome assembly of buffalopox virus isolate Karachi 2005, with a length of 195,630 bp, is presented here. Phylogenetic analysis shows the virus to cluster within Vaccinia species, and the genome contains 177 protein-coding sequences.

scholarly journals Complete Genome Sequence of Pantoea agglomerans ASB05 Using Illumina and PacBio Sequencing

2021 ◽  
Vol 10 (30) ◽  
Author(s):  
Sang In Lee ◽  
Thao D. Tran ◽  
Steven Huynh ◽  
Craig T. Parker ◽  
Robert Hnasko ◽  
...  
Keyword(s):  
Genome Sequence ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
Pantoea Agglomerans ◽  
Pacbio Sequencing ◽  
Content Type

We present the complete genome sequence of Pantoea agglomerans ASB05 and three associated plasmids, generated using a combination of the Illumina and PacBio platforms. P. agglomerans ASB05 was isolated from fresh cherries purchased in Albany, California, in 2016.

scholarly journals Telomere-to-Telomere Genome Assembly of Bursaphelenchus okinawaensis Strain SH1

2020 ◽  
Vol 9 (43) ◽  
Author(s):  
Simo Sun ◽  
Ryoji Shinya ◽  
Mehmet Dayi ◽  
Akemi Yoshida ◽  
Paul W. Sternberg ◽  
...  
Keyword(s):  
Genome Sequence ◽  
Genome Assembly ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
Bursaphelenchus Xylophilus ◽  
Laboratory Model ◽  
Content Type

ABSTRACT Bursaphelenchus okinawaensis is a self-fertilizing, hermaphroditic, fungus-feeding nematode used as a laboratory model for the genus Bursaphelenchus, which includes the important pathogen Bursaphelenchus xylophilus. Here, we report the nearly complete genome sequence of B. okinawaensis. The 70-Mbp assembly contained six scaffolds (>11 Mbp each) with telomere repeats on their ends, indicating complete chromosomes.

scholarly journals Complete Genome Sequence of the Plant Growth-Promoting Bacterium Pantoea agglomerans Strain UAEU18, Isolated from Date Palm Rhizosphere Soil in the United Arab Emirates

2020 ◽  
Vol 9 (17) ◽  
Author(s):  
AlReem S. Alkaabi ◽  
Naganeeswaran Sudalaimuthuasari ◽  
Biduth Kundu ◽  
Raja S. AlMaskari ◽  
Yasmeen Salha ◽  
...  
Keyword(s):  
Plant Growth ◽  
United Arab Emirates ◽  
Genome Sequence ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
Date Palm ◽  
Pantoea Agglomerans ◽  
Content Type ◽  
Plant Growth Promoting ◽  
Growth Promoting

We report the complete genome sequence of the plant growth-promoting bacterium Pantoea agglomerans strain UAEU18. Genome assembly of P. agglomerans strain UAEU18 resulted in a single gapless circular genome of 4.04 Mb, three associated plasmids (plasmid 1, 513,383 bp; plasmid 2, 86,850 bp; and plasmid 3, 184,488 bp), and a total of 4,556 gene models.

scholarly journals Complete Genome Sequence of Mycobacterium avium subsp. hominissuis Strain JP-H-1, Isolated from an Equine Abortion Case in Japan

2019 ◽  
Vol 8 (48) ◽  
Author(s):  
Yuta Kinoshita ◽  
Hidekazu Niwa ◽  
Eri Uchida-Fujii ◽  
Toshio Nukada
Keyword(s):  
Genome Sequence ◽  
Mycobacterium Avium ◽  
Genome Assembly ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
Mycobacterium Avium Subsp ◽  
Circular Chromosome ◽  
Content Type ◽  
Equine Abortion ◽  
Abortion Case

Here, we describe the complete genome assembly of Mycobacterium avium subsp. hominissuis strain JP-H-1, collected from an equine abortion case in Japan. JP-H-1 has a 5,491,452-bp circular chromosome and 3 plasmids.

scholarly journals Complete Genome Sequence of Gordonia rubripertincta SD5, a Soil Bacterium Isolated from a Di-(2-Ethylhexyl) Phthalate-Degrading Enrichment Culture

2020 ◽  
Vol 9 (45) ◽  
Author(s):  
Sang-Soo Han ◽  
Hye Kyeong Kang ◽  
Bok Yeon Jo ◽  
Byung-Gon Ryu ◽  
Hyun Mi Jin ◽  
...  
Keyword(s):  
Genome Sequence ◽  
Genome Assembly ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
Enrichment Culture ◽  
Soil Bacterium ◽  
Protein Coding ◽  
Coding Sequences ◽  
Content Type ◽  
Ethylhexyl Phthalate

ABSTRACT We report the complete genome sequence of Gordonia rubripertincta SD5, isolated from a soil-derived di-(2-ethylhexyl) phthalate-degrading enrichment culture. The final genome assembly consists of a 5.10-Mbp chromosome and a plasmid (159 kbp). A total of 4,814 coding sequences were predicted, including 4,741 protein-coding sequences.

scholarly journals Methylome and Complete Genome Sequence of Parageobacillus toebii DSM 14590T, a Thermophilic Bacterium

2020 ◽  
Vol 9 (25) ◽  
Author(s):  
E. Anne Hatmaker ◽  
Kaela B. O’Dell ◽  
Lauren A. Riley ◽  
Irenee C. Payne ◽  
Adam M. Guss
Keyword(s):  
Genome Sequence ◽  
Genome Assembly ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
Thermophilic Bacterium ◽  
Circular Chromosome ◽  
Content Type ◽  
Native Plasmid

ABSTRACT Here, we present the first complete genome assembly of the thermophilic bacterium Parageobacillus toebii DSM 14590T. The P. toebii DSM 14590T genome consists of a 3,270,071-bp circular chromosome and a 52,989-bp native plasmid.

scholarly journals Complete Genome Sequence of Lactobacillus harbinensis Strain NSMJ42, Isolated from Makgeolli, a Traditional Korean Alcoholic Beverage

2019 ◽  
Vol 8 (48) ◽  
Author(s):  
Ji Young Jung ◽  
Sang-Soo Han ◽  
Z-Hun Kim ◽  
Byung-Gon Ryu ◽  
Hyun Mi Jin ◽  
...  
Keyword(s):  
South Korea ◽  
Genome Sequence ◽  
Genome Assembly ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
Alcoholic Beverage ◽  
Protein Coding ◽  
Coding Sequences ◽  
Content Type

In the present work, we report the complete genome sequence of Lactobacillus harbinensis NSMJ42, isolated from makgeolli (a Korean traditional alcoholic beverage) in South Korea. The final genome assembly consists of a 3.29-Mbp chromosome with 3,082 protein-coding sequences and a G+C content of 53.36%.

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