Application of Ligand Field Theory for Simulation of the Pre-Edge Structure of X-Ray Absorption Spectra of Amorphous Systems

Author(s):  
D. M. Pashkov ◽  
D. S. Rubanik ◽  
M. V. Kirichkov ◽  
A. A. Guda ◽  
S. A. Guda ◽  
...  
2019 ◽  
Vol 58 (14) ◽  
pp. 9341-9350 ◽  
Author(s):  
Alexander Britz ◽  
Wojciech Gawelda ◽  
Tadesse A. Assefa ◽  
Lindsey L. Jamula ◽  
Jonathan T. Yarranton ◽  
...  

1989 ◽  
Vol 258 (3) ◽  
pp. 733-737 ◽  
Author(s):  
J M Arber ◽  
B R Dobson ◽  
R R Eady ◽  
S S Hasnain ◽  
C D Garner ◽  
...  

Vanadium K-edge X-ray-absorption spectra were collected for samples of thionine-oxidized, super-reduced (during enzyme turnover) and dithionite-reduced VFe-protein of the vanadium nitrogenase of Azotobacter chroococcum (Acl*). Both the e.x.a.f.s and the x.a.n.e.s. (X-ray-absorption near-edge structure) are consistent with the vanadium being present as part of a VFeS cluster; the environment of the vanadium is not changed significantly in different oxidation states of the protein. The vanadium atom is bound to three oxygen (or nitrogen), three sulphur and three iron atoms at 0.215(3), 0.231(3) and 0.275(3) nm respectively.


2020 ◽  
Author(s):  
Conor Rankine ◽  
Marwah Madkhali ◽  
Thomas Penfold

<p>X-ray spectroscopy delivers strong impact across the physical and biological sciences by providing end-users with highly-detailed information about the electronic and geometric structure of matter. To decode this information in challenging cases, e.g. <i>in operando</i> catalysts, batteries, and temporally-evolving systems, advanced theoretical calculations are necessary. The complexity and resource requirements often render these out of reach for end-users, and therefore data are often not interpreted exhaustively, leaving a wealth of valuable information unexploited. In this paper, we introduce supervised machine learning of X-ray absorption spectra, by developing a deep neural network (DNN) that is able to estimate Fe K-edge X-ray absorption near-edge structure spectra in less </p><p>than a second with no input beyond geometric information about the local environment of the absorption site. We predict peak positions with sub-eV accuracy and peak intensities with errors over an order of magnitude smaller than the spectral variations that the model is engineered to capture. The performance of the DNN is promising, as illustrated by its application to the structural refinement of iron(II)tris(bipyridine) and nitrosylmyoglobin, but also highlights areas for which future developments should focus.</p>


2020 ◽  
Vol 105 (7) ◽  
pp. 1099-1103 ◽  
Author(s):  
Mathieu Chassé ◽  
Marc Blanchard ◽  
Delphine Cabaret ◽  
Amélie Juhin ◽  
Delphine Vantelon ◽  
...  

Abstract Scandium is often associated with iron oxides in the environment. Despite the use of scandium as a geochemical tracer and the existence of world-class supergene deposits, uncertainties on speciation obscure the processes governing its sequestration and concentration. Here, we use first-principles approaches to interpret experimental K-edge X-ray absorption near-edge structure spectra of scandium either incorporated in or adsorbed on goethite and hematite, at concentrations relevant for the environment. This modeling helps to interpret the characteristic spectral features, providing key information to determine scandium speciation when associated with iron oxides. We show that scandium is substituted into iron oxides at low concentrations without modifying the crystal structure. When scandium is adsorbed onto iron oxide surfaces, the process occurs through outer-sphere complexation with a reduction in the coordination number of the hydration shell. Considering available X-ray absorption spectra from laterites, the present results confirm that scandium adsorption onto iron oxides is the dominant mechanism of sequestration in these geochemical conditions. This speciation explains efficient scandium recovery through mild metal-lurgical treatments of supergene lateritic ores. The specificities of scandium sorption mechanisms are related to the preservation of adsorbed scandium in million-years old laterites. These results demonstrate the emerging ability to precisely model fine X-ray absorption spectral features of trace metals associated with mineral phases relevant to the environment. It opens new perspectives to accurately determine trace metals speciation from high-resolution spatially resolved X-ray absorption near-edge structure spectroscopy in order to constrain the molecular mechanisms controlling their dynamics.


1988 ◽  
Vol 31 (1) ◽  
pp. 97-98
Author(s):  
R V Vedrinskiĭ ◽  
V L Kraĭzman

1967 ◽  
Vol 45 (20) ◽  
pp. 2335-2345 ◽  
Author(s):  
G. H. Faye ◽  
J. L. Horwood

Co(II)– and Ni(II)–2,2′-biquinoline (Biq) complexes of the type MBiqCl2 and MBiq(NO3)2 have been isolated. Electronic absorption spectra in the visible and near infrared, as well as magnetic measurements, show that CoBiqCl2 is essentially tetrahedral, whereas NiBiqCl2 and the MBiq(NO3)2 complexes are pseudo-octahedral. In acetone solution Co(II) forms a bis-Biq complex that is probably five coordinate, whereas the Ni(II) analogue is probably an octahedral species with a cis configuration. Elementary ligand field theory has been used to interpret the absorption spectra, and certain electronic transition assignments have been made that may be of general interest.


2020 ◽  
Author(s):  
Conor Rankine ◽  
Marwah Madkhali ◽  
Thomas Penfold

<p>X-ray spectroscopy delivers strong impact across the physical and biological sciences by providing end-users with highly-detailed information about the electronic and geometric structure of matter. To decode this information in challenging cases, e.g. <i>in operando</i> catalysts, batteries, and temporally-evolving systems, advanced theoretical calculations are necessary. The complexity and resource requirements often render these out of reach for end-users, and therefore data are often not interpreted exhaustively, leaving a wealth of valuable information unexploited. In this paper, we introduce supervised machine learning of X-ray absorption spectra, by developing a deep neural network (DNN) that is able to estimate Fe K-edge X-ray absorption near-edge structure spectra in less </p><p>than a second with no input beyond geometric information about the local environment of the absorption site. We predict peak positions with sub-eV accuracy and peak intensities with errors over an order of magnitude smaller than the spectral variations that the model is engineered to capture. The performance of the DNN is promising, as illustrated by its application to the structural refinement of iron(II)tris(bipyridine) and nitrosylmyoglobin, but also highlights areas for which future developments should focus.</p>


1988 ◽  
Vol 154 (1) ◽  
pp. 172
Author(s):  
R.V. Vedrinskii ◽  
V.L. Kraizman

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