scholarly journals Weighted Decoding for the Competence Reliability Problem of ECOC Multiclass Classification

2021 ◽  
Vol 2021 ◽  
pp. 1-11
Author(s):  
Lei Lei ◽  
Yafei Song

Error-Correcting Output Codes has become a well-known, established technique for multiclass classification due to its simplicity and efficiency. Each binary split contains different original classes. A noncompetent classifier emerges when it classifies an instance whose real class does not belong to the metasubclasses which is used to learn the classifier. How to reduce the error caused by the noncompetent classifiers under diversity big enough is urgent for ECOC classification. The weighted decoding strategy can be used to reduce the error caused by the noncompetence contradiction through relearning the weight coefficient matrix. To this end, a new weighted decoding strategy taking the classifier competence reliability into consideration is presented in this paper, which is suitable for any coding matrix. Support Vector Data Description is applied to compute the distance from an instance to the metasubclasses. The distance reflects the competence reliability and is fused as the weight in the base classifier combination. In so doing, the effect of the competent classifiers on classification is reinforced, while the bias induced by the noncompetent ones is decreased. Reflecting the competence reliability, the weights of classifiers for each instance change dynamically, which accords with the classification practice. The statistical simulations based on benchmark datasets indicate that our proposed algorithm outperforms other methods and provides new thought for solving the noncompetence problem.

2020 ◽  
Vol 15 ◽  
Author(s):  
Yi Zou ◽  
Hongjie Wu ◽  
Xiaoyi Guo ◽  
Li Peng ◽  
Yijie Ding ◽  
...  

Background: Detecting DNA-binding proetins (DBPs) based on biological and chemical methods is time consuming and expensive. Objective: In recent years, the rise of computational biology methods based on Machine Learning (ML) has greatly improved the detection efficiency of DBPs. Method: In this study, Multiple Kernel-based Fuzzy SVM Model with Support Vector Data Description (MK-FSVM-SVDD) is proposed to predict DBPs. Firstly, sex features are extracted from protein sequence. Secondly, multiple kernels are constructed via these sequence feature. Than, multiple kernels are integrated by Centered Kernel Alignment-based Multiple Kernel Learning (CKA-MKL). Next, fuzzy membership scores of training samples are calculated with Support Vector Data Description (SVDD). FSVM is trained and employed to detect new DBPs. Results: Our model is test on several benchmark datasets. Compared with other methods, MK-FSVM-SVDD achieves best Matthew's Correlation Coefficient (MCC) on PDB186 (0.7250) and PDB2272 (0.5476). Conclusion: We can conclude that MK-FSVM-SVDD is more suitable than common SVM, as the classifier for DNA-binding proteins identification.


2021 ◽  
Author(s):  
JianXi Yang ◽  
Fei Yang ◽  
Likai Zhang ◽  
Ren Li ◽  
Shixin Jiang ◽  
...  

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