Identification and Phylogenetic Analysis of Two Marine Petroleum-Degrading Yeasts from South China Sea Offshore Based on Magnetic Nanoparticles Extraction

2015 ◽  
Vol 9 (3) ◽  
pp. 215-221
Author(s):  
Chao Ma ◽  
Jiefeng Liu ◽  
Tian Zhou ◽  
Mingken Wei ◽  
Hanbing Han ◽  
...  
Author(s):  
Alexei V. Chernyshev ◽  
Neonila Polyakova ◽  
Temir A. Britayev ◽  
Olga A. Bratova ◽  
Elena S. Mekhova

About 50 nemertean species have been reported to live in symbiotic relationships with other invertebrates, but only two hoplonemertean species are associated with echinoderms (starfish). The palaeonemertean Cephalotrichella echinicola, sp. nov. is described from samples collected in Nha Trang Bay, Vietnam, South China Sea. The species is the first known nemertean associated with sea urchins (Metalia sternalis and M. spatagus), living on both the oral and the aboral surfaces of the host and freely moving among its spines. The internal morphology of the new species is described based on histological sections and confocal laser scanning microscopy with phalloidin and antibody labelling. Sequences of three nuclear gene markers (18S rRNA, 28S rRNA, and histone H3) and two mitochondrial gene markers (16S rRNA and COI) were compared with those of other palaeonemertean species, and a phylogenetic analysis suggested that C. echinicola is closest to the free-living Cephalotrichella alba Gibson & Sundberg, 1992. Both the morphological data and the phylogenetic analysis provide additional evidence for distinguishing the families Cephalotrichidae and Cephalotrichellidae and support the rejection of Cephalotrichella as a junior synonym of Cephalothrix. A new diagnosis of the genus Cephalotrichella is given. http://zoobank.org/urn:lsid:zoobank.org:pub:091B5D56-71B2-4F4C-9AD8-F666B4610DE2


2020 ◽  
Vol 70 (5) ◽  
pp. 3062-3068 ◽  
Author(s):  
Yang Liu ◽  
Juan Du ◽  
Jun Zhang ◽  
Qiliang Lai ◽  
Zongze Shao ◽  
...  

A Gram-stain-negative, aerobic, rod-shaped and motile bacterial strain, designated L53-10-65T, was isolated from deep seawater of the South China Sea. Strain L53-10-65T was found to grow at 4–41 °C (optimum, 28 °C), at pH 5.0–9.0 (pH 7.0–8.0) and in 0–7 % (w/v) NaCl (2 %). Phylogenetic analysis based on 16S rRNA gene sequences indicated that strain L53-10-65T fell within the genus Devosia , with the highest similarity to Devosia indica IO390501T (98.4 %), followed by ‘ Devosia lucknowensis ’ L15T (97.7 %) and Devosia riboflavina IFO 13584T (96.8 %). The digital DNA–DNA hybridization (dDDH) values between strain L53-10-65T and the three relatives above were 43.7, 21.5 and 20.9 %, respectively; the average nucleotide identity (ANI) values were 91.3, 78.4 and 76.8 %, respectively. These values were below the 70 % dDDH and 95–96 % ANI thresholds for bacterial species delineation. The major cellular fatty acids of strain L53-10-65T were summed feature 8 (C18 : 1 ω7c and/or C18 : 1 ω6c), C18 : 1 ω7c 11-methyl and C16 : 0. The major polar lipids were diphosphatidylglycerol, phosphatidylglycerol and glycolipids. The respiratory quinone was identified as Q-10. The DNA G+C content of strain L53-10-65T was 61.3 mol%. Based on the results of phylogenetic analysis and distinctive phenotypic characteristics, strain L53-10-65T is concluded to represent a novel species of the genus Devosia , for which the name Devosia marina sp. nov. is proposed. The type strain of the species is L53-10-65T (=MCCC 1A05139T=KCTC 72888T). Moreover, we propose that Devosia subaequoris is a later heterotypic synonym of Devosia soli based on the present results.


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