Extensive species diversification and marked geographic phylogenetic structure in the Mesoamerican genus Stenopelmatus (Orthoptera: Stenopelmatidae: Stenopelmatinae) revealed by mitochondrial and nuclear 3RAD data

The Jerusalem cricket subfamily Stenopelmatinae is distributed from south-western Canada through the western half of the United States to as far south as Ecuador. Recently, the generic classification of this subfamily was updated to contain two genera, the western North American Ammopelmatus, and the Mexican, and central and northern South American Stenopelmatus. The taxonomy of the latter genus was also revised, with 5, 13 and 14 species being respectively validated, declared as nomen dubium and described as new. Despite this effort, the systematics of Stenopelmatus is still far from complete. Here, we generated sequences of the mitochondrial DNA barcoding locus and performed two distinct DNA sequence-based approaches to assess the species’ limits among several populations of Stenopelmatus, with emphasis on populations from central and south-east Mexico. We reconstructed the phylogenetic relationships among representative species of the main clades within the genus using nuclear 3RAD data and carried out a molecular clock analysis to investigate its biogeographic history. The two DNA sequence-based approaches consistently recovered 34 putative species, several of which are apparently undescribed. Our estimates of phylogeny confirmed the recent generic update of Stenopelmatinae and revealed a marked phylogeographic structure within Stenopelmatus. Based on our results, we propose the existence of four species-groups within the genus (the faulkneri, talpa, Central America and piceiventris species-groups). The geographic distribution of these species-groups and our molecular clock estimates are congruent with the geological processes that took place in mountain ranges along central and southern Mexico, particularly since the Neogene. Our study emphasises the necessity to continue performing more taxonomic and phylogenetic studies on Stenopelmatus to clarify its actual species richness and evolutionary history in Mesoamerica.

Tracing the evolution of bioluminescent light organs across the deep-sea shrimp family Sergestidae using a genomic skimming and phylogenetic approach

Deep-sea shrimp of the family Sergestidae Dana, 1852 provide a unique system for studying the evolution of bioluminescence. Most species within the family possess autogenic bioluminescent photophores in one of three distinct forms: lensed photophores; non-lensed photophores; or internal organs of Pesta. This morphological diversity across the Sergestidae has resulted in recent major taxonomic revisions, dividing the two major genera (Sergia Stimpson, 1860 and Sergestes Milne Edwards, 1830) into 15. The present study capitalises on molecular data to construct an updated genus-level phylogeny of sergestid shrimp. DNA was successfully extracted from ~87 individuals belonging to 13 of the 15 newly proposed genera. A ‘genome skimming’ approach was implemented, allowing the capture of mitochondrial genomic data across 19 sergestid species. Additional individuals have been incorporated into the phylogeny through Sanger sequencing of both nuclear (H3 and NAK) and mitochondrial (16S and COI) genes. The resulting molecular phylogeny is compared with previous morphological trees with specific attention to genus-level relationships. The -sergestes group was rendered non-monophyletic and the -sergia group was recovered as monophyletic. Ancestral state reconstructions of light organ type indicate that organs of Pesta is the ancestral state for the family. Non-lensed photophores evolved once across the -sergia group, but were later lost in the deepest living genus, Sergia. Lensed photophores also evolved once within the genera Prehensilosergia Vereshchaka, Olesen & Lunina, 2014, Lucensosergia Vereshchaka, Olesen & Lunina, 2014 and Challengerosergia Vereshchaka, Olesen & Lunina, 2014. These findings identify preliminary patterns across light organ type and species’ depth distributions; however, future research that incorporates finer-scale depth data and more species is needed to confirm our findings.

A new genus of frenulates (Annelida: Siboglinidae) from shallow waters of the Yenisey River estuary, Kara Sea

Only seven frenulate species are currently known along the Eurasian coast of the Arctic Ocean. We describe a new genus and a new species of frenulates Crispabrachia yenisey, gen. nov. et sp. nov. The morphological analysis involved standard anatomical techniques, semithin sections and scanning electron microscopy (SEM). The molecular study included four markers (partial COI, 16S, 18S and 28S) and implemented Bayesian and Maximum likelihood phylogenetic approaches. The description of Crispabrachia gen. nov. is the first documented finding of frenulates in the Kara Sea at the estuary of the Yenisey River in rather shallow water (28 m). The establishment of a new genus is warranted based on the composition of morphological characters and several specific features including free, comparatively short curly tentacles, a triangular cephalic lobe with amplate base, the valvate extension of the posterior part of the forepart and prominent papillae on the nonmetameric region. The tube structure with prominent frills and the worm’s numerous tentacles, metameric papillae with cuticular plaques and segmental furrow on the forepart indicate that the new genus belongs to the polybrachiid group. Although the type locality in the Yenisey River estuary is unusual for siboglinids in general, the physical conditions here are common for other frenulates habitats, i.e. salinity ~30–33, bottom water temperature –1.5°C. This finding was made in the Yenisey Gulf in the region with the highest methane concentrations in the southern part of the Kara Sea that reflects permafrost degradation under the influence of river flow. Further study of the region would help to understand the factors influencing frenulate distributions and improve our knowledge of their biodiversity.

A molecular phylogeny of the circum-Antarctic Opiliones family Neopilionidae

The Opiliones family Neopilionidae is restricted to the terranes of the former temperate Gondwana: South America, Africa, Australia, New Caledonia and New Zealand. Despite decades of morphological study of this unique fauna, it has been difficult reconciling the classic species of the group (some described over a century ago) with recent cladistic morphological work and previous molecular work. Here we attempted to investigate the pattern and timing of diversification of Neopilionidae by sampling across the distribution range of the family and sequencing three markers commonly used in Sanger-based approaches (18S rRNA, 28S rRNA and cytochrome-c oxidase subunit I). We recovered a well-supported and stable clade including Ballarra (an Australian ballarrine) and the Enantiobuninae from South America, Australia, New Caledonia and New Zealand, but excluding Vibone (a ballarrine from South Africa). We further found a division between West and East Gondwana, with the South American Thrasychirus/Thrasychiroides always being sister group to an Australian–Zealandian (i.e. Australia + New Zealand + New Caledonia) clade. Resolution of the Australian–Zealandian taxa was analysis-dependent, but some analyses found Martensopsalis, from New Caledonia, as the sister group to an Australian–New Zealand clade. Likewise, the species from New Zealand formed a clade in some analyses, but Mangatangi often came out as a separate lineage from the remaining species. However, the Australian taxa never constituted a monophyletic group, with Ballarra always segregating from the remaining Australian species, which in turn constituted 1–3 clades, depending on the analysis. Our results identify several generic inconsistencies, including the possibility of Thrasychiroides nested within Thrasychirus, Forsteropsalis being paraphyletic with respect to Pantopsalis, and multiple lineages of Megalopsalis in Australia. In addition, the New Zealand Megalopsalis need generic reassignment: Megalopsalis triascuta will require its own genus and M. turneri is here transferred to Forsteropsalis, as Forsteropsalis turneri (Marples, 1944), comb. nov.

Repeated evolution of an undescribed morphotype of Rhagada (Gastropoda : Camaenidae) from the inland Pilbara, Western Australia

An undescribed small, banded morphotype of Rhagada land snails occurs widely in the rocky inland Pilbara region, Western Australia. Phylogenetic analysis of mitochondrial COI and 16S rRNA genes revealed that this novel morphotype is polyphyletic, comprising four distinct major clades, with divergences up to 21.4% at COI. These clades are apparently morphologically cryptic, with no obvious shell differences. Two of these species are associated with the major clade of Rhagada in the Pilbara mainland, one of which appears to be a variant of the larger, more globose species R. pilbarana, which occurs within 20km proximity. The other two small, banded species are phylogenetically distinct from each other and all other known Rhagada. This small, banded morphotype shows evidence for both plesiomorphy and homoplasy. The morphotype has evolved independently at least twice, and is associated with the reasonably uniform habitat and harsh conditions in the elevated hinterland of the inland Pilbara. The broad distribution of the inland, small, banded morphotype conforms to the pattern of broad-scale uniformity of shells of the more coastal species of Rhagada. Its repeated evolution, however, confirms that the morphological uniformity is not simply because of common ancestry, supporting the theory that shell form in Rhagada is adapted to a broadly homogenous environment. Shell morphology in this genus has been demonstrated on more than one occasion to have the potential to adapt to different available environments, and hence shells should be used with a degree of caution for taxonomic interpretation.

Systematics of the Australian golden trapdoor spiders of the Euoplos variabilis-group (Mygalomorphae : Idiopidae : Euoplini): parapatry and sympatry between closely related species in subtropical Queensland

The Australian golden trapdoor spiders of the tribe Euoplini (family Idiopidae) are among the most abundant and diverse of mygalomorph lineages in subtropical eastern Australia. Throughout this highly populated area, species in the monophyletic Euoplos variabilis-group are largely ubiquitous; however, species delimitation has long proven difficult in the group because species are morphologically very similar and have parapatric or even sympatric distributions. We address these challenges in the variabilis-group, and explore the phylogeny and taxonomy of species using an integrative systematic approach. In doing so, we apply a conservative, pragmatic methodology, naming only species for which adequate data are available (namely sequence data and unequivocally linked male specimens), and explicitly stating and mapping material that could not be linked to a species, to aid future research on the group. We describe five new species from south-eastern Queensland –E. booloumba sp. nov., E. jayneae sp. nov., E. raveni sp. nov., E. regalis sp. nov. and E. schmidti sp. nov.; we redescribe two previously named species – E. similaris (Rainbow & Pulleine, 1918) and E. variabilis (Rainbow & Pulleine, 1918); and we reillustrate the recently described E. grandis Wilson & Rix, 2019. The nominate species, E. variabilis, is shown to have a far smaller distribution than previously thought, and E. similaris is given a modern taxonomic description for the first time. A key to adult male specimens is also provided. This study further reveals a case of sympatry between two species within the variabilis-group; both E. raveni sp. nov. and E. schmidti sp. nov. occur in the Brisbane Valley, south of the Brisbane River – a notable result given that closely related mygalomorph species usually occur allopatrically. This work updates what is currently known of the phylogeny and diversity of one of the dominant mygalomorph lineages of subtropical eastern Australia, resolving a complex and highly endemic fauna. http://zoobank.org/urn:lsid:zoobank.org:pub:A4FB92F6-EFFF-4468-B1D8-000D69923996

Integrative taxonomy reveals multiple lineages of the spider genus Cybaeus endemic to the Ryukyu Islands, Japan (Arachnida : Araneae : Cybaeidae)

The epigean spiders of the genus Cybaeus L. Koch, 1868 are known to have diversified in western North America and the Japanese Archipelago. To date, ~80 species of Cybaeus are known from Japan, but they have not previously been recorded from the Ryukyu Islands that harbour a diversity of endemic species. Here we describe eight new species of Cybaeus from the Ryukyu Islands, extending the range of Cybaeus southward to the central Ryukyus. Both sexes of each of the new species are described, and their phylogenetic relationships are estimated using nuclear and mitochondrial gene markers. Although Cybaeus okumurai, sp. nov. and C. kumadori, sp. nov. possess genital features that are common in the other Japanese congeners, the other six species (C. yakushimensis, sp. nov., C. kodama, sp. nov., C. amamiensis, sp. nov., C. aikana, sp. nov., C. tokunoshimensis, sp. nov., and C. hikidai, sp. nov.) are characterised by an elongated embolus and tubular spermathecae. These unique genital characteristics and the phylogeny recovered here suggest that these features evolved independently among the Japanese and Ryukyu Cybaeus species. Phylogenetic analyses highlight an unusual biogeographical pattern in which C. yakushimensis and C. kodama endemic to Yakushima Island in the northern Ryukyus are related to species distributed in the central Ryukyus. In contrast, our phylogeny suggests that C. okumurai from Tanegashima Island in the northern Ryukyus is sister to C. ashikitaensis (Komatsu, 1968), distributed in Kyushu of the Japanese Archipelago. The retreat constructs and sympatric distribution of Cybaeus found among the Ryukyus are also briefly discussed. ZooBank: urn:lsid:zoobank.org:pub:640D15AA-17F4-48EE-88B4-485CFF8FCD60

Molecular systematics of Thouarella (Octocorallia:Primnoidae) with the description of three new species from the Southern Ocean based on combined molecular and morphological evidence

Thouarella Gray, 1870, is one of the most speciose genera among gorgonians of the family Primnoidae (Cnidaria:Octocorallia:Anthozoa), being remarkably diverse in the Antarctic and sub-Antarctic seafloor. However, their diversity in the Southern Ocean is likely underestimated. Phylogenetic analyses of mitochondrial and nuclear DNA markers were integrated with species delimitation approaches as well as morphological colonial and polyps features and skeletal SEM examinations to describe and illustrate three new species within Thouarella, from the Weddell Sea, Southern Ocean: T. amundseni sp. nov., T. dolichoespinosa sp. nov. and T. pseudoislai sp. nov. Our species delimitation results suggest, for the first time, the potential presence of Antarctic and sub-Antarctic cryptic species of primnoids, based on the likely presence of sibling species within T. undulata and T. crenelata. With the three new species here described, the global diversity of Thouarella has increased to 41 species, 15 of which are endemic to the Antarctic and sub-Antarctic waters. Consequently, our results provide new steps for uncovering the shelf benthonic macrofauna’s hidden diversity in the Southern Ocean. Finally, we recommend using an integrative taxonomic framework in this group of organisms and species delimitation approaches because the distinctions between some Thouarella species based only on a superficial examination of their macro- and micromorphological features is, in many cases, limited.

Reevaluation of the systematic position of some southern Brazilian Discocyrtus (Gonyleptidae:Roeweriinae), with the reinstatement of Bunopachylus

During a study of Discocyrtus Holmberg, 1878 and related genera, several species of alleged Pachylinae, mostly Discocyrtus, from southern Brazil were suspected of belonging in Roeweriinae. Herein, a maximum parsimony phylogenetic analysis of morphological characters was performed to test this hypothesis. Accordingly, the following taxonomic changes are herein proposed: the genus Bunopachylus Roewer, 1943 (currently in Pachylinae) is herein revalidated from synonymy with Discocyrtus, transferred to the Roeweriinae and now includes three species: B. armatissimus comb. nov. (for Discocyrtus armatissimus Roewer, 1913), B. orientalis comb. nov. (for Pachyloides orientalis Roewer, 1913) and B. occultus sp. nov. (which had been misidentified in the literature). A total of five new synonymies are proposed here: Discocyrtus milloti Roewer, 1943 = Discocyrtus coronatus Mello-Leitão, 1935 = Paradiscocyrtus trochanteralis Roewer, 1929 = Discocyrtus calcarifer Roewer, 1917 = Pachyloides orientalis Roewer, 1913, and Bunopachylus magnicalcar Roewer, 1943 (the type-species of Bunopachylus) = Discocyrtus armatissimus Roewer, 1913.

A revised phylogeny of the New Caledonian endemic genus Troglosiro (Opiliones : Cyphophthalmi : Troglosironidae) with the description of four new species

The Cyphophthalmi genus Troglosiro (the only genus of the family Troglosironidae) is endemic to New Caledonia, representing one of the oldest lineages of this emerged part of Zealandia. Its species are short-range endemics, many known from single localities. Here we examined the phylogenetic relationships of Troglosironidae using standard Sanger-sequenced markers (nuclear 18S rRNA, 28S rRNA, and mitochondrial 16S rRNA and cytochrome c oxidase subunit I) and a combination of phylogenetic methods, including parsimony under Direct Optimization and maximum likelihood with static homology. We also applied a diversity of species delimitation methods, including distance-based, topology-based and unsupervised machine learning to evaluate previous species designations. Finally, we used a combination of genetic and morphological information to describe four new species – T. dogny sp. nov., T. pin sp. nov., T. pseudojuberthiei sp. nov. and T. sharmai sp. nov. – and discuss them in the broader context of the phylogeny and biogeographic history of the family. A key to the species of Troglosiro is also provided. urn:lsid:zoobank.org:pub:93541314-8309-468C-BB77-B34C3A81137E