Linkage disequilibrium of single-nucleotide polymorphism data: how sampling methods affect estimates of linkage disequilibrium

BMC Proceedings ◽

10.1186/1753-6561-3-s7-s105 ◽

2009 ◽

Vol 3 (S7) ◽

Author(s):

Qimei He ◽

Bradley J Willcox

Keyword(s):

Single Nucleotide Polymorphism ◽

Linkage Disequilibrium ◽

Sampling Methods ◽

Single Nucleotide Polymorphism Data ◽

Nucleotide Polymorphism ◽

Single Nucleotide ◽

Polymorphism Data

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Analysis of high-density single-nucleotide polymorphism data: three novel methods that control for linkage disequilibrium between markers in a linkage analysis

BMC Proceedings ◽

10.1186/1753-6561-1-s1-s160 ◽

2007 ◽

Vol 1 (S1) ◽

Author(s):

Kristina Allen-Brady ◽

Benjamin D Horne ◽

Alka Malhotra ◽

Craig Teerlink ◽

Nicola J Camp ◽

...

Keyword(s):

Single Nucleotide Polymorphism ◽

Linkage Disequilibrium ◽

Linkage Analysis ◽

High Density ◽

Single Nucleotide Polymorphism Data ◽

Nucleotide Polymorphism ◽

Single Nucleotide ◽

Polymorphism Data ◽

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A Bayesian approach using covariance of single nucleotide polymorphism data to detect differences in linkage disequilibrium patterns between groups of individuals

Bioinformatics ◽

10.1093/bioinformatics/btq327 ◽

2010 ◽

Vol 26 (16) ◽

pp. 1999-2003 ◽

Author(s):

T. G. Clark ◽

S. G. Campino ◽

E. Anastasi ◽

S. Auburn ◽

Y. Y. Teo ◽

...

Keyword(s):

Single Nucleotide Polymorphism ◽

Linkage Disequilibrium ◽

Bayesian Approach ◽

Single Nucleotide Polymorphism Data ◽

Nucleotide Polymorphism ◽

Single Nucleotide ◽

Polymorphism Data

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Faculty Opinions recommendation of Modeling linkage disequilibrium and identifying recombination hotspots using single-nucleotide polymorphism data.

Faculty Opinions – Post-Publication Peer Review of the Biomedical Literature ◽

10.3410/f.1000425.201090 ◽

2003 ◽

Author(s):

Molly Przeworski

Keyword(s):

Single Nucleotide Polymorphism ◽

Linkage Disequilibrium ◽

Single Nucleotide Polymorphism Data ◽

Nucleotide Polymorphism ◽

Single Nucleotide ◽

Recombination Hotspots ◽

Polymorphism Data

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Clinical experience utilizing single-nucleotide polymorphism data captured by FAST-SeqS to reduce the transfer of polyploid embryos

Fertility and Sterility ◽

10.1016/j.fertnstert.2019.02.057 ◽

2019 ◽

Vol 111 (4) ◽

pp. e17

Author(s):

Dana Neitzel ◽

Lauren Walters-Sen ◽

Charlene Alouf ◽

Kristina Robinson ◽

Mei Zhu ◽

...

Keyword(s):

Single Nucleotide Polymorphism ◽

Clinical Experience ◽

Single Nucleotide Polymorphism Data ◽

Nucleotide Polymorphism ◽

Single Nucleotide ◽

Polymorphism Data

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A heuristic method for fast and accurate phasing and imputation of single-nucleotide polymorphism data in bi-parental plant populations

Theoretical and Applied Genetics ◽

10.1007/s00122-018-3156-9 ◽

2018 ◽

Vol 131 (11) ◽

pp. 2345-2357 ◽

Author(s):

Serap Gonen ◽

Valentin Wimmer ◽

R. Chris Gaynor ◽

Ed Byrne ◽

Gregor Gorjanc ◽

...

Keyword(s):

Single Nucleotide Polymorphism ◽

Heuristic Method ◽

Single Nucleotide Polymorphism Data ◽

Nucleotide Polymorphism ◽

Plant Populations ◽

Single Nucleotide ◽

Polymorphism Data ◽

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Swedish Population Substructure Revealed by Genome-Wide Single Nucleotide Polymorphism Data

PLoS ONE ◽

10.1371/journal.pone.0016747 ◽

2011 ◽

Vol 6 (2) ◽

pp. e16747 ◽

Author(s):

Elina Salmela ◽

Tuuli Lappalainen ◽

Jianjun Liu ◽

Pertti Sistonen ◽

Peter M. Andersen ◽

...

Keyword(s):

Single Nucleotide Polymorphism ◽

Population Substructure ◽

Single Nucleotide Polymorphism Data ◽

Nucleotide Polymorphism ◽

Swedish Population ◽

Single Nucleotide ◽

Genome Wide ◽

Polymorphism Data

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Genome-wide single-nucleotide polymorphism data reveal cryptic species within cryptic freshwater snail species-The case of theAncylus fluviatilisspecies complex

Ecology and Evolution ◽

10.1002/ece3.3706 ◽

2017 ◽

Vol 8 (2) ◽

pp. 1063-1072 ◽

Author(s):

Martina Weiss ◽

Hannah Weigand ◽

Alexander M. Weigand ◽

Florian Leese

Keyword(s):

Single Nucleotide Polymorphism ◽

Cryptic Species ◽

Freshwater Snail ◽

Single Nucleotide Polymorphism Data ◽

Snail Species ◽

Nucleotide Polymorphism ◽

Single Nucleotide ◽

Genome Wide ◽

Polymorphism Data

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A genome-wide linkage analysis of alcoholism on microsatellite and single-nucleotide polymorphism data, using alcohol dependence phenotypes and electroencephalogram measures

BMC Genetics ◽

10.1186/1471-2156-6-s1-s17 ◽

2005 ◽

Vol 6 (Suppl 1) ◽

pp. S17 ◽

Author(s):

Chun Zhang ◽

Simon Cawley ◽

Guoying Liu ◽

Manqiu Cao ◽

Harley Gorrell ◽

...

Keyword(s):

Single Nucleotide Polymorphism ◽

Linkage Analysis ◽

Alcohol Dependence ◽

Single Nucleotide Polymorphism Data ◽

Nucleotide Polymorphism ◽

Single Nucleotide ◽

Genome Wide ◽

A Genome ◽

Polymorphism Data

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Breast cancer prediction using genome wide single nucleotide polymorphism data

BMC Bioinformatics ◽

10.1186/1471-2105-14-s13-s3 ◽

2013 ◽

Vol 14 (Suppl 13) ◽

pp. S3 ◽

Author(s):

Mohsen Hajiloo ◽

Babak Damavandi ◽

Metanat HooshSadat ◽

Farzad Sangi ◽

John R Mackey ◽

...

Keyword(s):

Breast Cancer ◽

Single Nucleotide Polymorphism ◽

Single Nucleotide Polymorphism Data ◽

Nucleotide Polymorphism ◽

Single Nucleotide ◽

Cancer Prediction ◽

Genome Wide ◽

Polymorphism Data

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Sparse cluster analysis of large-scale discrete variables with application to single nucleotide polymorphism data

Journal of Applied Statistics ◽

10.1080/02664763.2012.743977 ◽

2013 ◽

Vol 40 (2) ◽

pp. 358-367 ◽

Author(s):

Baolin Wu

Keyword(s):

Cluster Analysis ◽

Single Nucleotide Polymorphism ◽

Large Scale ◽

Single Nucleotide Polymorphism Data ◽

Discrete Variables ◽

Nucleotide Polymorphism ◽

Single Nucleotide ◽

Polymorphism Data

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