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MethylStar: A fast and robust pre-processing pipeline for bulk or single-cell whole-genome bisulfite sequencing data
BMC Genomics
◽
10.1186/s12864-020-06886-3
◽
2020
◽
Vol 21
(1)
◽
Cited By ~ 1
Author(s):
Yadollah Shahryary
◽
Rashmi R. Hazarika
◽
Frank Johannes
Keyword(s):
Single Cell
◽
Bisulfite Sequencing
◽
Whole Genome
◽
Sequencing Data
◽
Whole Genome Bisulfite Sequencing
◽
Processing Pipeline
◽
Genome Bisulfite Sequencing
◽
Bisulfite Sequencing Data
Download Full-text
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References
A Bayesian Approach for Analysis of Whole-Genome Bisulfite Sequencing Data Identifies Disease-Associated Changes in DNA Methylation
Genetics
◽
10.1534/genetics.116.195008
◽
2017
◽
Vol 205
(4)
◽
pp. 1443-1458
◽
Cited By ~ 10
Author(s):
Owen J. L. Rackham
◽
Sarah R. Langley
◽
Thomas Oates
◽
Eleni Vradi
◽
Nathan Harmston
◽
...
Keyword(s):
Dna Methylation
◽
Bayesian Approach
◽
Bisulfite Sequencing
◽
Whole Genome
◽
Sequencing Data
◽
Whole Genome Bisulfite Sequencing
◽
Genome Bisulfite Sequencing
◽
Bisulfite Sequencing Data
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GBSA: a comprehensive software for analysing whole genome bisulfite sequencing data
Nucleic Acids Research
◽
10.1093/nar/gks1281
◽
2012
◽
Vol 41
(4)
◽
pp. e55-e55
◽
Cited By ~ 22
Author(s):
Touati Benoukraf
◽
Sarawut Wongphayak
◽
Luqman Hakim Abdul Hadi
◽
Mengchu Wu
◽
Richie Soong
Keyword(s):
Bisulfite Sequencing
◽
Whole Genome
◽
Sequencing Data
◽
Whole Genome Bisulfite Sequencing
◽
Genome Bisulfite Sequencing
◽
Bisulfite Sequencing Data
Download Full-text
MethGo: a comprehensive tool for analyzing whole-genome bisulfite sequencing data
BMC Genomics
◽
10.1186/1471-2164-16-s12-s11
◽
2015
◽
Vol 16
(Suppl 12)
◽
pp. S11
◽
Cited By ~ 12
Author(s):
Wen-Wei Liao
◽
Ming-Ren Yen
◽
Evaline Ju
◽
Fei-Man Hsu
◽
Larry Lam
◽
...
Keyword(s):
Bisulfite Sequencing
◽
Whole Genome
◽
Sequencing Data
◽
Whole Genome Bisulfite Sequencing
◽
Genome Bisulfite Sequencing
◽
Bisulfite Sequencing Data
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Approaches for the Analysis and Interpretation of Whole Genome Bisulfite Sequencing Data
Methods in Molecular Biology - Epigenome Editing
◽
10.1007/978-1-4939-7774-1_17
◽
2018
◽
pp. 299-310
◽
Cited By ~ 2
Author(s):
Tim Stuart
◽
Sam Buckberry
◽
Ryan Lister
Keyword(s):
Bisulfite Sequencing
◽
Whole Genome
◽
Sequencing Data
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Whole Genome Bisulfite Sequencing
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Genome Bisulfite Sequencing
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Bisulfite Sequencing Data
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wg-blimp: an end-to-end analysis pipeline for whole genome bisulfite sequencing data
BMC Bioinformatics
◽
10.1186/s12859-020-3470-5
◽
2020
◽
Vol 21
(1)
◽
Author(s):
Marius Wöste
◽
Elsa Leitão
◽
Sandra Laurentino
◽
Bernhard Horsthemke
◽
Sven Rahmann
◽
...
Keyword(s):
Bisulfite Sequencing
◽
Whole Genome
◽
Sequencing Data
◽
Analysis Pipeline
◽
Whole Genome Bisulfite Sequencing
◽
Genome Bisulfite Sequencing
◽
Bisulfite Sequencing Data
◽
End To End
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Performance of Mapping Approaches for Whole-Genome Bisulfite Sequencing Data in Crop Plants
Frontiers in Plant Science
◽
10.3389/fpls.2020.00176
◽
2020
◽
Vol 11
◽
Cited By ~ 1
Author(s):
Claudius Grehl
◽
Marc Wagner
◽
Ioana Lemnian
◽
Bruno Glaser
◽
Ivo Grosse
Keyword(s):
Bisulfite Sequencing
◽
Crop Plants
◽
Whole Genome
◽
Sequencing Data
◽
Whole Genome Bisulfite Sequencing
◽
Genome Bisulfite Sequencing
◽
Bisulfite Sequencing Data
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An information-theoretic approach to the modeling and analysis of whole-genome bisulfite sequencing data
BMC Bioinformatics
◽
10.1186/s12859-018-2086-5
◽
2018
◽
Vol 19
(1)
◽
Cited By ~ 9
Author(s):
Garrett Jenkinson
◽
Jordi Abante
◽
Andrew P. Feinberg
◽
John Goutsias
Keyword(s):
Bisulfite Sequencing
◽
Whole Genome
◽
Theoretic Approach
◽
Sequencing Data
◽
Modeling And Analysis
◽
Information Theoretic
◽
Whole Genome Bisulfite Sequencing
◽
Genome Bisulfite Sequencing
◽
Bisulfite Sequencing Data
◽
Information Theoretic Approach
Download Full-text
Saturation analysis for whole-genome bisulfite sequencing data
Nature Biotechnology
◽
10.1038/nbt.3524
◽
2016
◽
Vol 34
(7)
◽
pp. 691-693
◽
Cited By ~ 20
Author(s):
Emanuele Libertini
◽
Simon C Heath
◽
Rifat A Hamoudi
◽
Marta Gut
◽
Michael J Ziller
◽
...
Keyword(s):
Bisulfite Sequencing
◽
Whole Genome
◽
Sequencing Data
◽
Whole Genome Bisulfite Sequencing
◽
Genome Bisulfite Sequencing
◽
Bisulfite Sequencing Data
Download Full-text
Methy-Pipe: An Integrated Bioinformatics Pipeline for Whole Genome Bisulfite Sequencing Data Analysis
PLoS ONE
◽
10.1371/journal.pone.0100360
◽
2014
◽
Vol 9
(6)
◽
pp. e100360
◽
Cited By ~ 32
Author(s):
Peiyong Jiang
◽
Kun Sun
◽
Fiona M. F. Lun
◽
Andy M. Guo
◽
Huating Wang
◽
...
Keyword(s):
Data Analysis
◽
Bisulfite Sequencing
◽
Whole Genome
◽
Sequencing Data
◽
Bioinformatics Pipeline
◽
Whole Genome Bisulfite Sequencing
◽
Genome Bisulfite Sequencing
◽
Bisulfite Sequencing Data
◽
Sequencing Data Analysis
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Detection of differentially methylated regions from whole-genome bisulfite sequencing data without replicates
Nucleic Acids Research
◽
10.1093/nar/gkv715
◽
2015
◽
pp. gkv715
◽
Cited By ~ 48
Author(s):
Hao Wu
◽
Tianlei Xu
◽
Hao Feng
◽
Li Chen
◽
Ben Li
◽
...
Keyword(s):
Bisulfite Sequencing
◽
Whole Genome
◽
Sequencing Data
◽
Differentially Methylated Regions
◽
Whole Genome Bisulfite Sequencing
◽
Genome Bisulfite Sequencing
◽
Bisulfite Sequencing Data
Download Full-text
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