scholarly journals A hybrid simulation model approach to examine bacterial genome sequencing during a hospital outbreak

2020 ◽  
Vol 20 (1) ◽  
Author(s):  
Thomas M. Elliott ◽  
Xing J. Lee ◽  
Anna Foeglein ◽  
Patrick N. Harris ◽  
Louisa G. Gordon
Keyword(s):  
Simulation Model ◽  
Genome Sequencing ◽  
Bacterial Genome ◽  
Hybrid Simulation ◽  
Hospital Outbreak ◽  
Bacterial Genome Sequencing ◽  
Model Approach

scholarly journals De novo bacterial genome sequencing: Millions of very short reads assembled on a desktop computer

2008 ◽  
Vol 18 (5) ◽  
pp. 802-809 ◽  
Author(s):  
D. Hernandez ◽  
P. Francois ◽  
L. Farinelli ◽  
M. Osteras ◽  
J. Schrenzel
Keyword(s):  
Genome Sequencing ◽  
De Novo ◽  
Bacterial Genome ◽  
Desktop Computer ◽  
Short Reads ◽  
Bacterial Genome Sequencing

scholarly journals Phase-Variable Genotypes Sweetened by Glycosylation Phenotypes

2018 ◽  
Vol 200 (16) ◽  
Author(s):  
Nathan J. Weyand
Keyword(s):  
Genome Sequencing ◽  
Large Strain ◽  
Bacterial Genome ◽  
Protein Glycosylation ◽  
Phase Variable ◽  
Healthy Individuals ◽  
Content Type ◽  
Helpful Tool ◽  
Genome Analyses ◽  
Bacterial Genome Sequencing

ABSTRACT The affordability of bacterial genome sequencing has provided a helpful tool for sequencing large strain collections. Bente Børud (J. Bacteriol. 200:e00794-17, 2018, https://doi.org/doi:10.1128/JB.00794-17) recently led an effort to analyze the genomes of a collection of oropharyngeal Neisseria meningitidis isolates from 50 healthy individuals. Paired longitudinal isolates from each individual were sequenced. Genome analyses focused on (i) predicting the expression state of phase-variable loci that encode enzymes important for O-linked protein glycosylation and (ii) correlating specific genotypes with glycosylation phenotypes.

scholarly journals Insights from 20 years of bacterial genome sequencing

2015 ◽  
Vol 15 (2) ◽  
pp. 141-161 ◽  
Author(s):  
Miriam Land ◽  
Loren Hauser ◽  
Se-Ran Jun ◽  
Intawat Nookaew ◽  
Michael R. Leuze ◽  
...  
Keyword(s):  
Genome Sequencing ◽  
Bacterial Genome ◽  
Bacterial Genome Sequencing
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