Phaeobacter
sp. strain JL2886, isolated from deep seawater of the South China Sea, can catabolize
d
-amino acids. Here, we report the complete genome sequence of
Phaeobacter
sp. JL2886. It comprises ~4.06 Mbp, with a G+C content of 61.52%. A total of 3,913 protein-coding genes and 10 genes related to
d
-amino acid catabolism were obtained.