Novel Fluorescent Molecular Beacon DNA Probes for Biomolecular Recognition

Author(s):  
Kemin Wang ◽  
Jun Li ◽  
Xiaohong Fang ◽  
Sheldon Schuster ◽  
Marie Vicens ◽  
...  
2021 ◽  
Vol 17 ◽  
Author(s):  
Chuangui Sheng ◽  
Bo Wu ◽  
Lele Li ◽  
Yuliang Zhao

Background: Imaging of RNA in vivo is of great significance for elucidating their biological functions, revealing mechanisms behind disease, and for further diagnosis and treatment. Over the past decade, a variety of DNA-based molecular imaging techniques have been developed for RNA imaging in living cells. Nevertheless, non-invasive imaging of RNA in animals is still limited. Methods: An overview of the literature involving RNA imaging in vivo based on the integration of DNA probes with nanotechnology has been reviewed. Results: Attributed to DNA’s designability of sequences and specificity of recognition, molecular beacon, strand displacement and hybridization chain reaction would confer quick, efficient and specific response to target RNA. Multifunctional nanomaterials provide powerful support for the intracellular delivery of such DNA probes with spatiotemporal control over their sensing function, thereby achieving RNA imaging in vivo. Conclusion: Merging DNA probes with nanotechnology has gained substantial prospects for RNA imaging in vivo, which not only helps us to better elucidate biological functions of RNA, but also provides valuable information for further disease diagnosis and treatment.


RSC Advances ◽  
2015 ◽  
Vol 5 (6) ◽  
pp. 4019-4025 ◽  
Author(s):  
Fulin Zhou ◽  
Baoxin Li ◽  
Jiyuan Ma

Linear single-labeled DNA probes are used in this RCA-based fluorescence strategy for DNA detection, which could effectively avoid the fluorescence quenching between neighboring signal probes using hairpin probe as signal probe.


2021 ◽  
Vol 47 (3) ◽  
pp. 734-740
Author(s):  
V. A. Brylev ◽  
I. L. Lysenko ◽  
E. A. Kokin ◽  
Y. V. Martynenko-Makaev ◽  
D. Y. Ryazantsev ◽  
...  

Abstract— An azido-derivative of a fluorescein bifluorophore was obtained and used for the synthesis of “molecular beacon”-type oligonucleotide fluorogenic probes for RT-PCR. Eight probe variants were synthesized based on an optimized sequence: with one or two quencher residues at the 3'-end, with a single or bifluorophore fluorescein label attached to 5'-end using modifying phosphoramidites (short linker) or “click reaction” (long linker). Comparison of probes in RT-PCR showed that probes with a doubled quencher (single fluorescein on a short linker) and doubled dye on a short linker (single dye) are somewhat superior in sensitivity to a standard probe (single quencher, single dye on a short linker) by the value of ΔCt = 1–2.


2015 ◽  
Vol 34 (1-2) ◽  
pp. 1-27 ◽  
Author(s):  
Jiahao Huang ◽  
Jueqi Wu ◽  
Zhigang Li

AbstractHairpin DNA probes (HDPs) are specially designed single-stranded DNA and have excellent sensing specificity. The past decade has witnessed the fast development of HDP-based biosensors due to the tremendous applications in biology, medicine, environmental science, and engineering. Their detectable targets include nucleic acids, proteins, small molecules, and metal ions. In this review, we summarize the recent progress in HDP-based biosensors by categorizing them into molecular beacon (MB)-based sensing in homogeneous systems and other HDP-based solid-state sensors. The basic design of MBs with diverse signaling pairs is introduced first. Then, various detectable targets and the detection principles of all HDP-based biosensors are extensively discussed. Furthermore, the methods for amplifying the response signal and improving the detection performance are covered. Finally, the limitations and possible solutions about the sensors are discussed.


Author(s):  
M Shelly John ◽  
Gang Yao ◽  
Weihong Tan
Keyword(s):  

2004 ◽  
Vol 58 (9) ◽  
pp. 269A-280A ◽  
Author(s):  
Timothy J. Drake ◽  
Weihong Tan

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