scholarly journals Three Dimensional Structure Prediction of Neuromedin U Receptor 1 Using Homology Modelling

2017 ◽  
Vol 10 (1) ◽  
pp. 7-13
Author(s):  
Santhosh Kumar Nagarajan ◽  
Thirumurthy Madhavan
Keyword(s):  
Structure Prediction ◽  
Homology Modelling ◽  
Three Dimensional ◽  
Dimensional Structure ◽  
Three Dimensional Structure

scholarly journals Theoretical model of the three-dimensional structure of a sugar-binding protein from Pyrococcus horikoshii: structural analysis and sugar-binding simulations

2004 ◽  
Vol 380 (3) ◽  
pp. 677-684 ◽  
Author(s):  
Anna MARABOTTI ◽  
Sabato D'AURIA ◽  
Mosé ROSSI ◽  
Angelo M. FACCHIANO
Keyword(s):  
Amino Acids ◽  
Structure Prediction ◽  
Binding Protein ◽  
Homology Modelling ◽  
Three Dimensional ◽  
Dimensional Structure ◽  
Pyrococcus Horikoshii ◽  
Three Dimensional Structure ◽  
Sugar Binding ◽  
Maltodextrin Binding Protein

The three-dimensional structure of a sugar-binding protein from the thermophilic archaea Pyrococcus horikoshii has been predicted by a homology modelling procedure and investigated for its stability and its ability to bind different sugars. The model was created by using as templates the three-dimensional structures of a maltodextrin-binding protein from Pyrococcus furiosus, a trehalose–maltose-binding protein from Thermococcus litoralis and a maltodextrin-binding protein from Escherichia coli. According to the suggestions from the CASP (Critical Assessment of Structure Prediction) meetings, the homology modelling strategy was applied by assessing an accurate multiple sequence alignment, based on the high structural conservation in the family of ATP-binding cassette transporters to which all these proteins belong. The model has been deposited in the Protein Data Bank with the code 1R25. According to the origin of the protein, several characteristics in the organization of the secondary-structure elements and in the distribution of polar and non-polar amino acids are very similar to those of thermophilic proteins, compared with proteins from mesophilic organisms, and are analysed in detail. Finally, a simulation of the binding of several sugars in the binding site of this protein is presented, and interactions with amino acids are highlighted in detail.

scholarly journals RNA-Puzzles: A CASP-like evaluation of RNA three-dimensional structure prediction

RNA ◽  
2012 ◽  
Vol 18 (4) ◽  
pp. 610-625 ◽  
Author(s):  
J. A. Cruz ◽  
M.-F. Blanchet ◽  
M. Boniecki ◽  
J. M. Bujnicki ◽  
S.-J. Chen ◽  
...  
Keyword(s):  
Structure Prediction ◽  
Three Dimensional ◽  
Dimensional Structure ◽  
Three Dimensional Structure

Three-dimensional Structure Prediction of the Human LMTK3 Catalytic Domain in DYG-in Conformation

2017 ◽  
Vol 06 (01) ◽  
Author(s):  
Loubna Allam ◽  
Wiame Lakhlili ◽  
Zineb Tarhda ◽  
Jihane Akachar ◽  
Fatima Ghrifi ◽  
...  
Keyword(s):  
Structure Prediction ◽  
Catalytic Domain ◽  
Three Dimensional ◽  
Dimensional Structure ◽  
Three Dimensional Structure

Cloning, Sequence Analysis and Three-dimensional Structure Prediction of DNA Pol I from Thermophilic Geobacillus sp. MKK Isolated from an Iranian Hot Spring

2007 ◽  
Vol 142 (2) ◽  
pp. 200-208 ◽  
Author(s):  
Mohammad Khalaj-Kondori ◽  
Majid Sadeghizadeh ◽  
Khosro Khajeh ◽  
Hossein Naderi-Manesh ◽  
Ali Mohammad Ahadi ◽  
...  
Keyword(s):  
Sequence Analysis ◽  
Structure Prediction ◽  
Hot Spring ◽  
Three Dimensional ◽  
Dimensional Structure ◽  
Three Dimensional Structure ◽  
Pol I

Purification, Characterization, and Three-Dimensional Structure Prediction of Paramyosin, a Novel Allergen of Rapana venosa

2020 ◽  
Vol 68 (49) ◽  
pp. 14632-14642
Author(s):  
Chuang Yu ◽  
Xiang Gao ◽  
Hong Lin ◽  
Lili Xu ◽  
Ishfaq Ahmed ◽  
...  
Keyword(s):  
Structure Prediction ◽  
Three Dimensional ◽  
Dimensional Structure ◽  
Rapana Venosa ◽  
Three Dimensional Structure
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