IC-PCR AMPLIFICATION OF APPLE STEM GROOVING VIRUS ISOLATES AND COMPARISON OF POLYMERASE AND COAT PROTEIN GENE SEQUENCES

1998 ◽  
pp. 113-118 ◽  
Author(s):  
S.J. Crossley ◽  
V. Jacobi ◽  
A.N. Adams
Keyword(s):  
Coat Protein ◽  
Coat Protein Gene ◽  
Protein Gene ◽  
Pcr Amplification ◽  
Gene Sequences ◽  
Apple Stem Grooving Virus ◽  
Apple Stem ◽  
Virus Isolates

scholarly journals Sequence analysis of the capsid protein gene of an isolate of Apple stem grooving virus, and its survey in Southern Brazil

2001 ◽  
Vol 26 (3) ◽  
pp. 655-659 ◽  
Author(s):  
OSMAR NICKEL ◽  
THOR V.M. FAJARDO ◽  
WILHELM JELKMANN ◽  
GILMAR B. KUHN
Keyword(s):  
Amino Acid ◽  
Coat Protein ◽  
Coat Protein Gene ◽  
Large Scale ◽  
Protein Gene ◽  
Amino Acid Sequences ◽  
Close Relative ◽  
Apple Stem Grooving Virus ◽  
Apple Stem ◽  
High Amino Acid

Apple stem grooving virus (ASGV) is one of the most important viruses infecting fruit trees. This study aimed at the molecular characterization of ASGV infecting apple (Malus domestica) plants in Santa Catarina (SC). RNA extracted from plants infected with isolate UV01 was used as a template for RT-PCR using specific primers. An amplified DNA fragment of 755 bp was sequenced. The coat protein gene of ASGV isolate UV01 contains 714 nucleotides, coding for a protein of 237 amino acids with a predicted Mr of approximately 27 kDa. The nucleotide and the deduced amino acid sequences of the coat protein gene showed identities of 90.9% and 97.9%, respectively, with a Japanese isolate of ASGV. Very high amino acid homologies (98.7%) were also found with Citrus tatter leaf capillovirus (CTLV), a very close relative of ASGV. These results indicate low coat protein gene variability among Capillovirus isolates from distinct regions. In a restricted survey, mother stocks in orchards and plants introduced into the country for large scale fruit production were indexed and shown to be infected by ASGV (20%), usually in a complex with other (latent) apple viruses (80%).

Analysis of the Coat Protein Gene of Indian Strain of Apple Stem Grooving Virus

2009 ◽  
Vol 19 (1) ◽  
pp. 91-94 ◽  
Author(s):  
Anuradha Negi ◽  
Tanuja Rana ◽  
Yogesh Kumar ◽  
Raja Ram ◽  
Vipin Hallan ◽  
...  
Keyword(s):  
Coat Protein ◽  
Coat Protein Gene ◽  
Protein Gene ◽  
Apple Stem Grooving Virus ◽  
Indian Strain ◽  
Apple Stem

scholarly journals Sequence variability in the coat protein gene of Cowpea severe mosaic virus isolates from northeastern Brazil

2011 ◽  
Vol 36 (2) ◽  
pp. 121-124 ◽  
Author(s):  
José Evando A. Beserra Jr. ◽  
Eduardo C. Andrade ◽  
Rosa F.R. Araújo Camarço ◽  
Aline K.Q. Nascimento ◽  
José Albérsio A. Lima
Keyword(s):  
Coat Protein ◽  
Mosaic Virus ◽  
Coat Protein Gene ◽  
Protein Gene ◽  
Northeastern Brazil ◽  
Sequence Variability ◽  
Virus Isolates

Coat protein gene sequences of garlic and onion isolates of the onion yellow dwarf potyvirus (OYDV)

1996 ◽  
Vol 141 (12) ◽  
pp. 2277-2287 ◽  
Author(s):  
K. Kobayashi ◽  
P. Rabinowicz ◽  
F. Bravo-Almonacid ◽  
M. Helguera ◽  
V. Conci ◽  
...  
Keyword(s):  
Coat Protein ◽  
Coat Protein Gene ◽  
Protein Gene ◽  
Yellow Dwarf ◽  
Gene Sequences

scholarly journals Analysis of synonymous codon usage bias and phylogeny of coat protein gene in banana bract mosaic virus isolates

VirusDisease ◽  
2017 ◽  
Vol 28 (2) ◽  
pp. 156-163 ◽  
Author(s):  
Atul B. Patil ◽  
Vijayendra S. Dalvi ◽  
Akhilesh A. Mishra ◽  
Bal Krishna ◽  
Abdul Azeez
Keyword(s):  
Coat Protein ◽  
Codon Usage ◽  
Mosaic Virus ◽  
Coat Protein Gene ◽  
Codon Usage Bias ◽  
Protein Gene ◽  
Synonymous Codon ◽  
Synonymous Codon Usage ◽  
Virus Isolates ◽  
Synonymous Codon Usage Bias
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