scholarly journals Beiwe: A data collection platform for high-throughput digital phenotyping

2021 ◽  
Vol 6 (68) ◽  
pp. 3417
Author(s):  
Jukka-Pekka Onnela ◽  
Caleb Dixon ◽  
Keary Griffin ◽  
Tucker Jaenicke ◽  
Leila Minowada ◽  
...  
Plant Methods ◽  
2019 ◽  
Vol 15 (1) ◽  
Author(s):  
Austin A. Dobbels ◽  
Aaron J. Lorenz

In the original article [1], under the subheading “Image data processing”, last paragraph, last sentence that reads as “The least …… data collection” was incorrectly published. The correct sentence should read as “Least-significant differences (P < 0.20) were calculated for all 36 trials on both ground-based and UAS-image based scores for both dates of data collection.” The original article has been corrected.


Metabolomics ◽  
2013 ◽  
Vol 9 (3) ◽  
pp. 558-563 ◽  
Author(s):  
Lawrence J. Clos ◽  
M. Fransisca Jofre ◽  
James J. Ellinger ◽  
William M. Westler ◽  
John L. Markley

2004 ◽  
Vol 37 (3) ◽  
pp. 399-409 ◽  
Author(s):  
Nicholas K. Sauter ◽  
Ralf W. Grosse-Kunstleve ◽  
Paul D. Adams

Improved methods for indexing diffraction patterns from macromolecular crystals are presented. The novel procedures include a more robust way to verify the position of the incident X-ray beam on the detector, an algorithm to verify that the deduced lattice basis is consistent with the observations, and an alternative approach to identify the metric symmetry of the lattice. These methods help to correct failures commonly experienced during indexing, and increase the overall success rate of the process. Rapid indexing, without the need for visual inspection, will play an important role as beamlines at synchrotron sources prepare for high-throughput automation.


2006 ◽  
Vol 62 (10) ◽  
pp. 1162-1169 ◽  
Author(s):  
A. Beteva ◽  
F. Cipriani ◽  
S. Cusack ◽  
S. Delageniere ◽  
J. Gabadinho ◽  
...  

2018 ◽  
Author(s):  
M. Jason de la Cruz ◽  
Michael W. Martynowycz ◽  
Johan Hattne ◽  
Tamir Gonen

AbstractWe developed a procedure for the cryoEM method MicroED using SerialEM. With this approach, SerialEM coordinates stage rotation, microscope operation, and camera functions for automated continuous-rotation MicroED data collection. More than 300 datasets can be collected overnight in this way, facilitating high-throughput MicroED data collection for large-scale data analyses.


2021 ◽  
Author(s):  
Mathew V Kiang ◽  
Jarvis T Chen ◽  
Nancy Krieger ◽  
Caroline O Buckee ◽  
Monica J Alexander ◽  
...  

AbstractThe ubiquity of smartphones, with their increasingly sophisticated array of sensors, presents an unprecedented opportunity for researchers to collect diverse, temporally-dense data about human behavior while minimizing participant burden. Researchers increasingly make use of smartphone applications for “digital phenotyping,” the collection of phone sensor and log data to study the lived experiences of subjects in their natural environments. While digital phenotyping has shown promise in fields such as psychiatry and neuroscience, there are fundamental gaps in our knowledge about data collection and non-collection (i.e., missing data) in smartphone-based digital phenotyping. Here, we show that digital phenotyping presents a viable method of data collection, over long time periods, across diverse study participants with a range of sociodemographic characteristics. We examined accelerometer and GPS sensor data of 211 participants, amounting to 29,500 person-days of observation, using Bayesian hierarchical negative binomial regression. We found that iOS users had higher rates of accelerometer non-collection but lower GPS non-collection than Android users. For GPS data, rates of non-collection did not differ by race/ethnicity, education, age, or gender. For accelerometer data, Black participants had higher rates of non-collection while Asian participants had slightly lower non-collection. For both sensors, non-collection increased by 0.5% to 0.9% per week. These results demonstrate the feasibility of using smartphone-based digital phenotyping across diverse populations, for extended periods of time, and within diverse cohorts. As smartphones become increasingly embedded in everyday life, the insights of this study will help guide the design, planning, and analysis of digital phenotyping studies.


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