1B1648 All-atom molecular dynamics simulations of drug efflux transporter AcrB(Membrane Proteins 1,The 49th Annual Meeting of the Biophysical Society of Japan)

Annual Meeting ◽

Drug Efflux ◽

Efflux Transporter ◽

Biophysical Society ◽

3P107 Molecular dynamics simulations of β2AR : the comparison of different protein-lipid force field parameters(03. Membrane proteins,Poster,The 52nd Annual Meeting of the Biophysical Society of Japan(BSJ2014))

Seibutsu Butsuri ◽

10.2142/biophys.54.s266_5 ◽

2014 ◽

Vol 54 (supplement1-2) ◽

pp. S266

Author(s):

Md. Iqbal Mahmood ◽

Nozomu Kamiya ◽

Hideaki Fujitani ◽

Yamashita Takefumi

Keyword(s):

Molecular Dynamics ◽

Membrane Proteins ◽

Force Field ◽

Annual Meeting ◽

Biophysical Society ◽

Force Field Parameters ◽

1B1624 Molecular dynamics simulations of SRII-HtrII complex with a modeled HAMP domain(Membrane Proteins 1,The 49th Annual Meeting of the Biophysical Society of Japan)

Seibutsu Butsuri ◽

10.2142/biophys.51.s33_2 ◽

2011 ◽

Vol 51 (supplement) ◽

pp. S33

Author(s):

Koro Nishikata ◽

Mitsunori Ikeguchi ◽

Akinori Kidera

Keyword(s):

Molecular Dynamics ◽

Membrane Proteins ◽

Annual Meeting ◽

Biophysical Society ◽

1P105 Molecular dynamics simulations of ATP/ADP bound forms of SR Ca^-ATPase using CHARMM force field with modified polyphosphate parameters(03. Membrane proteins,Poster,The 52nd Annual Meeting of the Biophysical Society of Japan(BSJ2014))

Seibutsu Butsuri ◽

10.2142/biophys.54.s158_3 ◽

2014 ◽

Vol 54 (supplement1-2) ◽

pp. S158

Author(s):

Yasuaki Komuro ◽

Suyong Re ◽

Chigusa Kobayashi ◽

Eiro Muneyuki ◽

Yuji Sugita

Keyword(s):

Molecular Dynamics ◽

Membrane Proteins ◽

Force Field ◽

Annual Meeting ◽

Biophysical Society ◽

Charmm Force Field ◽

1P242 1I1435 Analysis of the effect of water molecules on lipid bilayer dynamics in aqueous salt solutions using molecular dynamics simulations(Biol & Artifi memb.:Dynamics,Oral Presentations,The 48th Annual Meeting of the Biophysical Society of Japan)

Seibutsu Butsuri ◽

10.2142/biophys.50.s62_2 ◽

2010 ◽

Vol 50 (supplement2) ◽

pp. S62

Author(s):

Rina Kagawa ◽

Yoshinori Hirano ◽

Kenji Yasuoka ◽

Masato Yasui

Keyword(s):

Molecular Dynamics ◽

Annual Meeting ◽

Lipid Bilayer ◽

Water Molecules ◽

Salt Solutions ◽

Aqueous Salt Solutions ◽

Biophysical Society ◽

Dynamics Simulations ◽

Oral Presentations

3P314 Conformational analysis of PA-glycans by replica-exchange molecular dynamics simulations(30.Miscellaneous topics,Poster,The 51st Annual Meeting of the Biophysical Society of Japan)

Seibutsu Butsuri ◽

10.2142/biophys.53.s264_1 ◽

2013 ◽

Vol 53 (supplement1-2) ◽

pp. S264

Author(s):

Shigehisa Watanabe ◽

Suyong Re ◽

Eiro Muneyuki ◽

Yuji Sugita

Keyword(s):

Molecular Dynamics ◽

Conformational Analysis ◽

Annual Meeting ◽

Replica Exchange ◽

Replica Exchange Molecular Dynamics ◽

Biophysical Society ◽

1P-030 Analysis of Tension Sensing Sites of E-coli Mechanosensitive Channel MscL Using Molecular Dynamics Simulations(The 46th Annual Meeting of the Biophysical Society of Japan)

Seibutsu Butsuri ◽

10.2142/biophys.48.s25_4 ◽

2008 ◽

Vol 48 (supplement) ◽

pp. S25

Author(s):

Yasuyuki Sawada ◽

Masaki Murase ◽

Masahiro Sokabe

Keyword(s):

Molecular Dynamics ◽

Annual Meeting ◽

Mechanosensitive Channel ◽

E Coli ◽

Biophysical Society ◽

3B1010 Molecular dynamics simulations of dynein motor domain in explicit water(Proteins:Structure & Function III:Dynamics and Circadian Rhythm,Oral Presentation,The 50th Annual Meeting of the Biophysical Society of Japan)

Seibutsu Butsuri ◽

10.2142/biophys.52.s58_4 ◽

2012 ◽

Vol 52 (supplement) ◽

pp. S58

Author(s):

Narutoshi Kamiya ◽

Tadaaki Mashimo ◽

Yu Takano ◽

Takahide Kon ◽

Genji Kurisu ◽

...

Keyword(s):

Molecular Dynamics ◽

Circadian Rhythm ◽

Annual Meeting ◽

Oral Presentation ◽

Motor Domain ◽

Dynein Motor ◽

Biophysical Society ◽

Dynamics Simulations ◽

Explicit Water

2P135 Analysis of translocation of tRNA molecules through ribosome using electron microscopy density map and molecular dynamics simulations(The 48th Annual Meeting of the Biophysical Society of Japan)

Seibutsu Butsuri ◽

10.2142/biophys.50.s106_1 ◽

2010 ◽

Vol 50 (supplement2) ◽

pp. S106

Author(s):

Hisashi Ishida

Keyword(s):

Electron Microscopy ◽

Molecular Dynamics ◽

Annual Meeting ◽

Biophysical Society ◽

Density Map ◽

2PT166 Theoretical analysis of fully-hydrated structures of human adult hemoglobin exploiting molecular dynamics simulations(The 50th Annual Meeting of the Biophysical Society of Japan)

Seibutsu Butsuri ◽

10.2142/biophys.52.s133_5 ◽

2012 ◽

Vol 52 (supplement) ◽

pp. S133

Author(s):

Tetsuhiko Itagaki ◽

Jiyoung Kang ◽

Masaru Tateno

Keyword(s):

Molecular Dynamics ◽

Theoretical Analysis ◽

Annual Meeting ◽

Human Adult ◽

Biophysical Society ◽

Adult Hemoglobin ◽

3TA1-05 Investigation of Protein Domain Motions by Molecular Dynamics Simulations(The 47th Annual Meeting of the Biophysical Society of Japan)

Seibutsu Butsuri ◽

10.2142/biophys.49.s52_2 ◽

2009 ◽

Vol 49 (supplement) ◽

pp. S52

Author(s):

Hiroko Kondo ◽

Noriaki Okimoto ◽

Gentaro Morimoto ◽

Makoto Taiji

Keyword(s):

Molecular Dynamics ◽

Annual Meeting ◽

Protein Domain ◽

Biophysical Society ◽

Dynamics Simulations ◽

Domain Motions