1PT188 Improvement of sampling efficiency through combined use of molecular dynamics simulations with implicit and explicit solvent models(The 50th Annual Meeting of the Biophysical Society of Japan)

Annual Meeting ◽

Sampling Efficiency ◽

Solvent Models ◽

Explicit Solvent ◽

Combined Use ◽

Biophysical Society ◽

Dynamics Simulations ◽

Implicit And Explicit

Improvement of Sampling Efficiency through Combined use of Molecular Dynamics Simulations with Implicit and Explicit Solvent Models

Biophysical Journal ◽

10.1016/j.bpj.2012.11.961 ◽

2013 ◽

Vol 104 (2) ◽

pp. 170a-171a ◽

Cited By ~ 1

Author(s):

Hiroko X. Kondo ◽

Noriaki Okimoto ◽

Makoto Taiji

Keyword(s):

Molecular Dynamics ◽

Sampling Efficiency ◽

Solvent Models ◽

Explicit Solvent ◽

Combined Use ◽

Dynamics Simulations ◽

Implicit And Explicit

Stability of ion triplets in ionic liquid/lithium salt solutions: Insights from implicit and explicit solvent models and molecular dynamics simulations

Journal of Computational Chemistry ◽

10.1002/jcc.23853 ◽

2015 ◽

Vol 36 (10) ◽

pp. 751-762 ◽

Cited By ~ 7

Author(s):

Andrzej Eilmes ◽

Piotr Kubisiak

Keyword(s):

Molecular Dynamics ◽

Ionic Liquid ◽

Lithium Salt ◽

Liquid Lithium ◽

Salt Solutions ◽

Solvent Models ◽

Explicit Solvent ◽

Dynamics Simulations ◽

Implicit And Explicit

1P242 1I1435 Analysis of the effect of water molecules on lipid bilayer dynamics in aqueous salt solutions using molecular dynamics simulations(Biol & Artifi memb.:Dynamics,Oral Presentations,The 48th Annual Meeting of the Biophysical Society of Japan)

Seibutsu Butsuri ◽

10.2142/biophys.50.s62_2 ◽

2010 ◽

Vol 50 (supplement2) ◽

pp. S62

Author(s):

Rina Kagawa ◽

Yoshinori Hirano ◽

Kenji Yasuoka ◽

Masato Yasui

Keyword(s):

Molecular Dynamics ◽

Annual Meeting ◽

Lipid Bilayer ◽

Water Molecules ◽

Salt Solutions ◽

Aqueous Salt Solutions ◽

Biophysical Society ◽

Dynamics Simulations ◽

Oral Presentations

3P314 Conformational analysis of PA-glycans by replica-exchange molecular dynamics simulations(30.Miscellaneous topics,Poster,The 51st Annual Meeting of the Biophysical Society of Japan)

Seibutsu Butsuri ◽

10.2142/biophys.53.s264_1 ◽

2013 ◽

Vol 53 (supplement1-2) ◽

pp. S264

Author(s):

Shigehisa Watanabe ◽

Suyong Re ◽

Eiro Muneyuki ◽

Yuji Sugita

Keyword(s):

Molecular Dynamics ◽

Conformational Analysis ◽

Annual Meeting ◽

Replica Exchange ◽

Replica Exchange Molecular Dynamics ◽

Biophysical Society ◽

1P-030 Analysis of Tension Sensing Sites of E-coli Mechanosensitive Channel MscL Using Molecular Dynamics Simulations(The 46th Annual Meeting of the Biophysical Society of Japan)

Seibutsu Butsuri ◽

10.2142/biophys.48.s25_4 ◽

2008 ◽

Vol 48 (supplement) ◽

pp. S25

Author(s):

Yasuyuki Sawada ◽

Masaki Murase ◽

Masahiro Sokabe

Keyword(s):

Molecular Dynamics ◽

Annual Meeting ◽

Mechanosensitive Channel ◽

E Coli ◽

Biophysical Society ◽

3B1010 Molecular dynamics simulations of dynein motor domain in explicit water(Proteins:Structure & Function III:Dynamics and Circadian Rhythm,Oral Presentation,The 50th Annual Meeting of the Biophysical Society of Japan)

Seibutsu Butsuri ◽

10.2142/biophys.52.s58_4 ◽

2012 ◽

Vol 52 (supplement) ◽

pp. S58

Author(s):

Narutoshi Kamiya ◽

Tadaaki Mashimo ◽

Yu Takano ◽

Takahide Kon ◽

Genji Kurisu ◽

...

Keyword(s):

Molecular Dynamics ◽

Circadian Rhythm ◽

Annual Meeting ◽

Oral Presentation ◽

Motor Domain ◽

Dynein Motor ◽

Biophysical Society ◽

Dynamics Simulations ◽

Explicit Water

2P135 Analysis of translocation of tRNA molecules through ribosome using electron microscopy density map and molecular dynamics simulations(The 48th Annual Meeting of the Biophysical Society of Japan)

Seibutsu Butsuri ◽

10.2142/biophys.50.s106_1 ◽

2010 ◽

Vol 50 (supplement2) ◽

pp. S106

Author(s):

Hisashi Ishida

Keyword(s):

Electron Microscopy ◽

Molecular Dynamics ◽

Annual Meeting ◽

Biophysical Society ◽

Density Map ◽

2PT166 Theoretical analysis of fully-hydrated structures of human adult hemoglobin exploiting molecular dynamics simulations(The 50th Annual Meeting of the Biophysical Society of Japan)

Seibutsu Butsuri ◽

10.2142/biophys.52.s133_5 ◽

2012 ◽

Vol 52 (supplement) ◽

pp. S133

Author(s):

Tetsuhiko Itagaki ◽

Jiyoung Kang ◽

Masaru Tateno

Keyword(s):

Molecular Dynamics ◽

Theoretical Analysis ◽

Annual Meeting ◽

Human Adult ◽

Biophysical Society ◽

Adult Hemoglobin ◽

3TA1-05 Investigation of Protein Domain Motions by Molecular Dynamics Simulations(The 47th Annual Meeting of the Biophysical Society of Japan)

Seibutsu Butsuri ◽

10.2142/biophys.49.s52_2 ◽

2009 ◽

Vol 49 (supplement) ◽

pp. S52

Author(s):

Hiroko Kondo ◽

Noriaki Okimoto ◽

Gentaro Morimoto ◽

Makoto Taiji

Keyword(s):

Molecular Dynamics ◽

Annual Meeting ◽

Protein Domain ◽

Biophysical Society ◽

Dynamics Simulations ◽

Domain Motions

3TA5-02 Conformational changes of a peptide induced by temperature and pressure : multibaric-multithermal molecular dynamics simulations(The 47th Annual Meeting of the Biophysical Society of Japan)

Seibutsu Butsuri ◽

10.2142/biophys.49.s58_2 ◽

2009 ◽

Vol 49 (supplement) ◽

pp. S58

Author(s):

Hisashi Okumura

Keyword(s):

Molecular Dynamics ◽

Annual Meeting ◽

Conformational Changes ◽

Biophysical Society ◽

Temperature And Pressure ◽