1B1558 A Molecular Dynamics Study on Proton Pump Function of Cytochrome c Oxidase(Proteins: Structure & Function I,Oral Presentation,The 50th Annual Meeting of the Biophysical Society of Japan)

Takefumi Yamashita

doi:10.2142/biophys.52.s22_4

1B1558 A Molecular Dynamics Study on Proton Pump Function of Cytochrome c Oxidase(Proteins: Structure & Function I,Oral Presentation,The 50th Annual Meeting of the Biophysical Society of Japan)

Seibutsu Butsuri ◽

10.2142/biophys.52.s22_4 ◽

2012 ◽

Vol 52 (supplement) ◽

pp. S22

Author(s):

Takefumi Yamashita

Keyword(s):

Molecular Dynamics ◽

Cytochrome C ◽

Structure Function ◽

Cytochrome C Oxidase ◽

Annual Meeting ◽

Proton Pump ◽

Oral Presentation ◽

Pump Function ◽

Biophysical Society

Download Full-text

1B1546 Structural fluctuations of capping proteins analyzed by molecular dynamics simulations(Proteins: Structure & Function I,Oral Presentation,The 50th Annual Meeting of the Biophysical Society of Japan)

Seibutsu Butsuri ◽

10.2142/biophys.52.s22_3 ◽

2012 ◽

Vol 52 (supplement) ◽

pp. S22

Author(s):

Ryotaro Koike ◽

Shuichi Takeda ◽

Yuichiro Maeda ◽

Motonori Ota

Keyword(s):

Molecular Dynamics ◽

Structure Function ◽

Molecular Dynamics Simulations ◽

Annual Meeting ◽

Oral Presentation ◽

Capping Proteins ◽

Biophysical Society ◽

Structural Fluctuations ◽

Dynamics Simulations

Download Full-text

2P041 Conformational Gating for Electron Transfer Reaction from Cytochrome c to Cytochrome c Oxidase in Mitochondrial Respiratory Chain(01B. Protein: Structure & Function,Poster,The 52nd Annual Meeting of the Biophysical Society of Japan(BSJ2014))

Seibutsu Butsuri ◽

10.2142/biophys.54.s201_5 ◽

2014 ◽

Vol 54 (supplement1-2) ◽

pp. S201

Author(s):

Mizue Imai ◽

Wataru Sato ◽

Kaoru Inoue ◽

Koichi Sakamoto ◽

Kyoko Shinzawa ◽

...

Keyword(s):

Electron Transfer ◽

Protein Structure ◽

Cytochrome C ◽

Structure Function ◽

Cytochrome C Oxidase ◽

Annual Meeting ◽

Transfer Reaction ◽

Mitochondrial Respiratory Chain ◽

Electron Transfer Reaction ◽

Biophysical Society

Download Full-text

2TA1-09 Cytochrome c Oxidase Structures Facilitating the Four-Electron Reduction of Oxygen in One-Step and the High Proton Pump Efficiency(The 47th Annual Meeting of the Biophysical Society of Japan)

Seibutsu Butsuri ◽

10.2142/biophys.49.s40_2 ◽

2009 ◽

Vol 49 (supplement) ◽

pp. S40

Author(s):

Kazuhiro Ohta ◽

Kazumasa Muramoto ◽

Kyoko Shinzawa-Itoh ◽

Masao Mochizuki ◽

Katsumasa Kanda ◽

...

Keyword(s):

Cytochrome C ◽

Cytochrome C Oxidase ◽

Annual Meeting ◽

Proton Pump ◽

Pump Efficiency ◽

High Proton ◽

Biophysical Society ◽

One Step ◽

Electron Reduction

Download Full-text

2P-072 Cytochrome c Oxidase Structures Facilitating the Four-Electron Reduction of Oxygen in One-Step and the High Proton Pump Efficiency(Heme proteins,The 47th Annual Meeting of the Biophysical Society of Japan)

Seibutsu Butsuri ◽

10.2142/biophys.49.s117_7 ◽

2009 ◽

Vol 49 (supplement) ◽

pp. S117-S118

Author(s):

Kazuhiro Ohta ◽

Kazumasa Muramoto ◽

Kyoko Shinzawa-Itoh ◽

Masao Mochizuki ◽

Katsumasa Kanda ◽

...

Keyword(s):

Cytochrome C ◽

Cytochrome C Oxidase ◽

Annual Meeting ◽

Proton Pump ◽

Heme Proteins ◽

Pump Efficiency ◽

High Proton ◽

Biophysical Society ◽

One Step ◽

Electron Reduction

Download Full-text

3B1010 Molecular dynamics simulations of dynein motor domain in explicit water(Proteins:Structure & Function III:Dynamics and Circadian Rhythm,Oral Presentation,The 50th Annual Meeting of the Biophysical Society of Japan)

Seibutsu Butsuri ◽

10.2142/biophys.52.s58_4 ◽

2012 ◽

Vol 52 (supplement) ◽

pp. S58

Author(s):

Narutoshi Kamiya ◽

Tadaaki Mashimo ◽

Yu Takano ◽

Takahide Kon ◽

Genji Kurisu ◽

...

Keyword(s):

Molecular Dynamics ◽

Circadian Rhythm ◽

Molecular Dynamics Simulations ◽

Annual Meeting ◽

Oral Presentation ◽

Motor Domain ◽

Dynein Motor ◽

Biophysical Society ◽

Dynamics Simulations ◽

Explicit Water

Download Full-text

1B1424 Solution NMR analysis of FUG C-terminal domain derived from Na^+-driven motor of Vibrio(Proteins: Structure & Function I,Oral Presentation,The 50th Annual Meeting of the Biophysical Society of Japan)

Seibutsu Butsuri ◽

10.2142/biophys.52.s21_3 ◽

2012 ◽

Vol 52 (supplement) ◽

pp. S21

Author(s):

Mizuki Gohara ◽

Rei Abe-Yoshizumi ◽

Shiori Kobayashi ◽

Yohei Miyanoiri ◽

Yoshikazu Hattori ◽

...

Keyword(s):

Structure Function ◽

Annual Meeting ◽

Oral Presentation ◽

Solution Nmr ◽

Nmr Analysis ◽

Terminal Domain ◽

Biophysical Society

Download Full-text

1B1522 Local conformational changes of proteins in DNA interfaces(Proteins: Structure & Function I,Oral Presentation,The 50th Annual Meeting of the Biophysical Society of Japan)

Seibutsu Butsuri ◽

10.2142/biophys.52.s22_1 ◽

2012 ◽

Vol 52 (supplement) ◽

pp. S22

Author(s):

Tomoko Sunami ◽

Hidetoshi Kono

Keyword(s):

Structure Function ◽

Annual Meeting ◽

Conformational Changes ◽

Oral Presentation ◽

Biophysical Society

Download Full-text

2P-075 Resonance Raman Marker Bands of Hydroxyfarnesylethyl Substituent of Cytochrome c Oxidase(Heme proteins,The 47th Annual Meeting of the Biophysical Society of Japan)

Seibutsu Butsuri ◽

10.2142/biophys.49.s118_3 ◽

2009 ◽

Vol 49 (supplement) ◽

pp. S118

Author(s):

Miyuki Sakaguchi ◽

Kyoko Shinzawa-Itoh ◽

Shinya Yoshikawa ◽

Hiroshi Fujii ◽

Takashi Ogura

Keyword(s):

Cytochrome C ◽

Cytochrome C Oxidase ◽

Annual Meeting ◽

Heme Proteins ◽

Resonance Raman ◽

Biophysical Society

Download Full-text

1I1648 The chemical nature of the bridging ligand at the oxygen reduction site of the resting oxidized cytochrome c oxidase(Heme proteins 1,The 49th Annual Meeting of the Biophysical Society of Japan)

Seibutsu Butsuri ◽

10.2142/biophys.51.s54_3 ◽

2011 ◽

Vol 51 (supplement) ◽

pp. S54

Author(s):

Miyuki Sakaguchi ◽

Kyoko Shinzawa-Itoh ◽

Shinya Yoshikawa ◽

Takashi Ogura

Keyword(s):

Cytochrome C ◽

Oxygen Reduction ◽

Cytochrome C Oxidase ◽

Annual Meeting ◽

Heme Proteins ◽

Chemical Nature ◽

Bridging Ligand ◽

Biophysical Society

Download Full-text

2SJ-02 Interactions in Electron Transfer Complex between Cytochrome c and Cytochrome c Oxidase(2SJ New developments in protein complex research: From molecules to supramolecules and aggregates,The 49th Annual Meeting of the Biophysical Society of Japan)

Seibutsu Butsuri ◽

10.2142/biophys.51.s22_5 ◽

2011 ◽

Vol 51 (supplement) ◽

pp. S22

Author(s):

Koichiro Ishimori

Keyword(s):

Electron Transfer ◽

Cytochrome C ◽

Cytochrome C Oxidase ◽

Annual Meeting ◽

Protein Complex ◽

New Developments ◽

Biophysical Society ◽

Electron Transfer Complex

Download Full-text