1P007 Protein-protein complex structure prediction using the solution theory in the energy representation(Protein: Structure,Poster,The 52th Annual Meeting of the Biophysical Society of Japan(BSJ2014))

1P-018 Development of a meta-score for protein structure prediction(Protein:Structure, The 47th Annual Meeting of the Biophysical Society of Japan)

Seibutsu Butsuri ◽

10.2142/biophys.49.s66_3 ◽

2009 ◽

Vol 49 (supplement) ◽

pp. S66

Author(s):

Matsuyuki Shirota ◽

Takashi Ishida ◽

Kengo Kinoshita

Keyword(s):

Protein Structure ◽

Annual Meeting ◽

Structure Prediction ◽

3P-012 Toward the Success of Template-Free Protein Structure Prediction : Dependency of Performance on the Fragment Libraries(Protein:Structure,The 47th Annual Meeting of the Biophysical Society of Japan)

Seibutsu Butsuri ◽

10.2142/biophys.49.s152_5 ◽

2009 ◽

Vol 49 (supplement) ◽

pp. S152

Author(s):

Shintaro Minami ◽

George Chikenji

Keyword(s):

Protein Structure ◽

Annual Meeting ◽

Structure Prediction ◽

Free Protein ◽

Biophysical Society ◽

Template Free ◽

Fragment Libraries

3G1458 Development of a threading-based structure prediction technique utilizing sequentially shuffeled templates(3G Protein: Structure 4,The 49th Annual Meeting of the Biophysical Society of Japan)

Seibutsu Butsuri ◽

10.2142/biophys.51.s132_1 ◽

2011 ◽

Vol 51 (supplement) ◽

pp. S132

Author(s):

Kengo Sawada ◽

Shintaro Minami ◽

George Chikenji

Keyword(s):

Protein Structure ◽

Annual Meeting ◽

Structure Prediction ◽

Prediction Technique ◽

2PT002 Development of a de novo protein structure prediction method based on the antecedent domain segment(ADS) hyphothesis(The 50th Annual Meeting of the Biophysical Society of Japan)

Seibutsu Butsuri ◽

10.2142/biophys.52.s119_5 ◽

2012 ◽

Vol 52 (supplement) ◽

pp. S119-S120

Author(s):

Kota Nakamori ◽

Shintaro Minami ◽

Kengo Sawada ◽

George Chikenji

Keyword(s):

Protein Structure ◽

Annual Meeting ◽

Structure Prediction ◽

De Novo ◽

Prediction Method ◽

Biophysical Society ◽

Protein Structure Prediction Method ◽

Structure Prediction Method

3G1534 A multi-dimensional umbrella sampling approach for structure prediction of transmembrane helical dimer(3G Protein: Structure 4,The 49th Annual Meeting of the Biophysical Society of Japan)

Seibutsu Butsuri ◽

10.2142/biophys.51.s132_3 ◽

2011 ◽

Vol 51 (supplement) ◽

pp. S132

Author(s):

Pai-Chi Li ◽

Naoyuki Miyashita ◽

Satoshi Ishido ◽

Yuji Sugita

Keyword(s):

Protein Structure ◽

Annual Meeting ◽

Structure Prediction ◽

Umbrella Sampling ◽

Biophysical Society ◽

Sampling Approach

3P013 Protein complex analysis using single particle reconstruction and SEM(Protein: Structure,The 48th Annual Meeting of the Biophysical Society of Japan)

Seibutsu Butsuri ◽

10.2142/biophys.50.s147_1 ◽

2010 ◽

Vol 50 (supplement2) ◽

pp. S147

Author(s):

Chikara Sato ◽

Kazuhiro Mio ◽

Toshihiko Ogura ◽

Yuusuke Maruyama ◽

Masaaki Kawata ◽

...

Keyword(s):

Protein Structure ◽

Annual Meeting ◽

Single Particle ◽

Protein Complex ◽

Complex Analysis ◽

Single Particle Reconstruction ◽

Biophysical Society ◽

Particle Reconstruction

3P026 Estimation of native-like state of protein structure using statistical potentials for protein structure prediction(Protein: Structure,The 48th Annual Meeting of the Biophysical Society of Japan)

Seibutsu Butsuri ◽

10.2142/biophys.50.s149_4 ◽

2010 ◽

Vol 50 (supplement2) ◽

pp. S149

Author(s):

Matsuyuki Shirota ◽

Takashi Ishida ◽

Kengo Kinoshita

Keyword(s):

Protein Structure ◽

Annual Meeting ◽

Structure Prediction ◽

Statistical Potentials ◽

1G1424 Challenges to elucidate small biomolecular complex structure in electron cryo-microscope with a cold field emission gun(Protein: Structure 1,The 49th Annual Meeting of the Biophysical Society of Japan)

Seibutsu Butsuri ◽

10.2142/biophys.51.s46_3 ◽

2011 ◽

Vol 51 (supplement) ◽

pp. S46

Author(s):

Keita Watanabe ◽

Kaori Ogawa ◽

Takuo Yasunaga

Keyword(s):

Protein Structure ◽

Annual Meeting ◽

Field Emission ◽

Complex Structure ◽

Protein-Protein Complex Structure Prediction using the Solution Theory in the Energy Representation

Biophysical Journal ◽

10.1016/j.bpj.2016.11.327 ◽

2017 ◽

Vol 112 (3) ◽

pp. 53a-54a

Author(s):

Kazuhiro Takemura ◽

Akio Kitao ◽

Nobuyuki Matubayasi

Keyword(s):

Protein Complex ◽

Structure Prediction ◽

Complex Structure ◽

Solution Theory

3P-015 Protein structure prediction by the all atom model that includes "ghost water"(Protein:Structure,The 47th Annual Meeting of the Biophysical Society of Japan)

Seibutsu Butsuri ◽

10.2142/biophys.49.s153_2 ◽

2009 ◽

Vol 49 (supplement) ◽

pp. S153

Author(s):

Shumpei Sawato ◽

George Chikenji

Keyword(s):

Protein Structure ◽

Annual Meeting ◽

Structure Prediction ◽

Atom Model ◽