3G1534 A multi-dimensional umbrella sampling approach for structure prediction of transmembrane helical dimer(3G Protein: Structure 4,The 49th Annual Meeting of the Biophysical Society of Japan)

1P-018 Development of a meta-score for protein structure prediction(Protein:Structure, The 47th Annual Meeting of the Biophysical Society of Japan)

Seibutsu Butsuri ◽

10.2142/biophys.49.s66_3 ◽

2009 ◽

Vol 49 (supplement) ◽

pp. S66

Author(s):

Matsuyuki Shirota ◽

Takashi Ishida ◽

Kengo Kinoshita

Keyword(s):

Protein Structure ◽

Annual Meeting ◽

Structure Prediction ◽

3P-012 Toward the Success of Template-Free Protein Structure Prediction : Dependency of Performance on the Fragment Libraries(Protein:Structure,The 47th Annual Meeting of the Biophysical Society of Japan)

Seibutsu Butsuri ◽

10.2142/biophys.49.s152_5 ◽

2009 ◽

Vol 49 (supplement) ◽

pp. S152

Author(s):

Shintaro Minami ◽

George Chikenji

Keyword(s):

Protein Structure ◽

Annual Meeting ◽

Structure Prediction ◽

Free Protein ◽

Biophysical Society ◽

Template Free ◽

Fragment Libraries

3G1458 Development of a threading-based structure prediction technique utilizing sequentially shuffeled templates(3G Protein: Structure 4,The 49th Annual Meeting of the Biophysical Society of Japan)

Seibutsu Butsuri ◽

10.2142/biophys.51.s132_1 ◽

2011 ◽

Vol 51 (supplement) ◽

pp. S132

Author(s):

Kengo Sawada ◽

Shintaro Minami ◽

George Chikenji

Keyword(s):

Protein Structure ◽

Annual Meeting ◽

Structure Prediction ◽

Prediction Technique ◽

2PT002 Development of a de novo protein structure prediction method based on the antecedent domain segment(ADS) hyphothesis(The 50th Annual Meeting of the Biophysical Society of Japan)

Seibutsu Butsuri ◽

10.2142/biophys.52.s119_5 ◽

2012 ◽

Vol 52 (supplement) ◽

pp. S119-S120

Author(s):

Kota Nakamori ◽

Shintaro Minami ◽

Kengo Sawada ◽

George Chikenji

Keyword(s):

Protein Structure ◽

Annual Meeting ◽

Structure Prediction ◽

De Novo ◽

Prediction Method ◽

Biophysical Society ◽

Protein Structure Prediction Method ◽

Structure Prediction Method

1P007 Protein-protein complex structure prediction using the solution theory in the energy representation(Protein: Structure,Poster,The 52th Annual Meeting of the Biophysical Society of Japan(BSJ2014))

Seibutsu Butsuri ◽

10.2142/biophys.54.s142_1 ◽

2014 ◽

Vol 54 (supplement1-2) ◽

pp. S142

Author(s):

Takemura Kazuhiro ◽

Matubayasi Nobuyuki ◽

Kitao Akio

Keyword(s):

Protein Structure ◽

Annual Meeting ◽

Protein Complex ◽

Structure Prediction ◽

Complex Structure ◽

Solution Theory ◽

3P011 Implementation of Replica-Exchange Umbrella Sampling to the DFTB+ Simulation Package(01A. Protein: Structure,Poster,The 52nd Annual Meeting of the Biophysical Society of Japan(BSJ2014))

Seibutsu Butsuri ◽

10.2142/biophys.54.s250_5 ◽

2014 ◽

Vol 54 (supplement1-2) ◽

pp. S250

Author(s):

Shingo Ito ◽

Yuko Okamoto ◽

Stephan Irle

Keyword(s):

Protein Structure ◽

Annual Meeting ◽

Umbrella Sampling ◽

Replica Exchange ◽

Biophysical Society ◽

Simulation Package

3P026 Estimation of native-like state of protein structure using statistical potentials for protein structure prediction(Protein: Structure,The 48th Annual Meeting of the Biophysical Society of Japan)

Seibutsu Butsuri ◽

10.2142/biophys.50.s149_4 ◽

2010 ◽

Vol 50 (supplement2) ◽

pp. S149

Author(s):

Matsuyuki Shirota ◽

Takashi Ishida ◽

Kengo Kinoshita

Keyword(s):

Protein Structure ◽

Annual Meeting ◽

Structure Prediction ◽

Statistical Potentials ◽

3P-015 Protein structure prediction by the all atom model that includes "ghost water"(Protein:Structure,The 47th Annual Meeting of the Biophysical Society of Japan)

Seibutsu Butsuri ◽

10.2142/biophys.49.s153_2 ◽

2009 ◽

Vol 49 (supplement) ◽

pp. S153

Author(s):

Shumpei Sawato ◽

George Chikenji

Keyword(s):

Protein Structure ◽

Annual Meeting ◽

Structure Prediction ◽

Atom Model ◽

3P-013 Context-specific score for protein structure prediction(Protein:Structure,The 47th Annual Meeting of the Biophysical Society of Japan)

Seibutsu Butsuri ◽

10.2142/biophys.49.s152_6 ◽

2009 ◽

Vol 49 (supplement) ◽

pp. S152-S153

Author(s):

Hikmet Cetin ◽

Takeshi N Sasaki ◽

Masaki Sasai

Keyword(s):

Protein Structure ◽

Annual Meeting ◽

Structure Prediction ◽

Biophysical Society ◽

Context Specific ◽

Specific Score

2P034 High-speed AFM observation of structure and function of MukB(01B. Protein: Structure & Function,Poster,The 52nd Annual Meeting of the Biophysical Society of Japan(BSJ2014))

Seibutsu Butsuri ◽

10.2142/biophys.54.s200_4 ◽

2014 ◽

Vol 54 (supplement1-2) ◽

pp. S200

Author(s):

Kenta Yagi ◽

Koichi Yano ◽

Noriyuki Kodera ◽

Hironori Niki ◽

Toshio Ando

Keyword(s):

Protein Structure ◽

Structure Function ◽

Annual Meeting ◽

High Speed ◽

Structure And Function ◽

Biophysical Society ◽

And Function ◽

Afm Observation