scholarly journals Translating the Molecules: Adapting Neural Machine Translation to Predict IUPAC Names from a Chemical Identifier

2021 ◽  
Author(s):  
Jennifer Handsel ◽  
Brian Matthews ◽  
Nicola Knight ◽  
Simon Coles
Keyword(s):  
Machine Translation ◽  
Inorganic Compounds ◽  
Training Data ◽  
Neural Machine Translation ◽  
Chemical Identifier ◽  
Machine Learning Model ◽  
Decoder Architecture ◽  
Service Training ◽  
The Neural Networks ◽  
Low Coverage

We present a sequence-to-sequence machine learning model for predicting the IUPAC name of a chemical from its standard International Chemical Identifier (InChI). The model uses two stacks of transformers in an encoder-decoder architecture, a setup similar to the neural networks used in state-of-the-art machine translation. Unlike neural machine translation, which usually tokenizes input and output into words or sub-words, our model processes the InChI and predicts the 2 IUPAC name character by character. The model was trained on a dataset of 10 million InChI/IUPAC name pairs freely downloaded from the National Library of Medicine’s online PubChem service. Training took five days on a Tesla K80 GPU, and the model achieved test-set accuracies of 95% (character-level) and 91% (whole name). The model performed particularly well on organics, with the exception of macrocycles. The predictions were less accurate for inorganic compounds, with a character-level accuracy of 71%. This can be explained by inherent limitations in InChI for representing inorganics, as well as low coverage (1.4 %) of the training data.

scholarly journals Translating the Molecules: Adapting Neural Machine Translation to Predict IUPAC Names from a Chemical Identifier

2021 ◽  
Author(s):  
Jennifer Handsel ◽  
Brian Matthews ◽  
Nicola Knight ◽  
Simon Coles
Keyword(s):  
Machine Translation ◽  
Inorganic Compounds ◽  
Training Data ◽  
Neural Machine Translation ◽  
Chemical Identifier ◽  
Machine Learning Model ◽  
Decoder Architecture ◽  
Service Training ◽  
The Neural Networks ◽  
Low Coverage

We present a sequence-to-sequence machine learning model for predicting the IUPAC name of a chemical from its standard International Chemical Identifier (InChI). The model uses two stacks of transformers in an encoder-decoder architecture, a setup similar to the neural networks used in state-of-the-art machine translation. Unlike neural machine translation, which usually tokenizes input and output into words or sub-words, our model processes the InChI and predicts the 2 IUPAC name character by character. The model was trained on a dataset of 10 million InChI/IUPAC name pairs freely downloaded from the National Library of Medicine’s online PubChem service. Training took five days on a Tesla K80 GPU, and the model achieved test-set accuracies of 95% (character-level) and 91% (whole name). The model performed particularly well on organics, with the exception of macrocycles. The predictions were less accurate for inorganic compounds, with a character-level accuracy of 71%. This can be explained by inherent limitations in InChI for representing inorganics, as well as low coverage (1.4 %) of the training data.

scholarly journals Translating the InChI: adapting neural machine translation to predict IUPAC names from a chemical identifier

2021 ◽  
Vol 13 (1) ◽  
Author(s):  
Jennifer Handsel ◽  
Brian Matthews ◽  
Nicola J. Knight ◽  
Simon J. Coles
Keyword(s):  
Machine Translation ◽  
Organometallic Compounds ◽  
Training Data ◽  
Neural Machine Translation ◽  
Chemical Identifier ◽  
Machine Learning Model ◽  
Decoder Architecture ◽  
Service Training ◽  
The Neural Networks ◽  
Low Coverage

AbstractWe present a sequence-to-sequence machine learning model for predicting the IUPAC name of a chemical from its standard International Chemical Identifier (InChI). The model uses two stacks of transformers in an encoder-decoder architecture, a setup similar to the neural networks used in state-of-the-art machine translation. Unlike neural machine translation, which usually tokenizes input and output into words or sub-words, our model processes the InChI and predicts the IUPAC name character by character. The model was trained on a dataset of 10 million InChI/IUPAC name pairs freely downloaded from the National Library of Medicine’s online PubChem service. Training took seven days on a Tesla K80 GPU, and the model achieved a test set accuracy of 91%. The model performed particularly well on organics, with the exception of macrocycles, and was comparable to commercial IUPAC name generation software. The predictions were less accurate for inorganic and organometallic compounds. This can be explained by inherent limitations of standard InChI for representing inorganics, as well as low coverage in the training data.

Improving thai-lao neural machine translation with similarity lexicon

2021 ◽  
pp. 1-10
Author(s):  
Zhiqiang Yu ◽  
Yuxin Huang ◽  
Junjun Guo
Keyword(s):  
Machine Translation ◽  
Semantic Information ◽  
Neural Machine Translation ◽  
Low Resource ◽  
Translation Quality ◽  
Decoder Architecture ◽  
Baseline System ◽  
Input Sentence ◽  
Resource Conditions ◽  
Language Pair

It has been shown that the performance of neural machine translation (NMT) drops starkly in low-resource conditions. Thai-Lao is a typical low-resource language pair of tiny parallel corpus, leading to suboptimal NMT performance on it. However, Thai and Lao have considerable similarities in linguistic morphology and have bilingual lexicon which is relatively easy to obtain. To use this feature, we first build a bilingual similarity lexicon composed of pairs of similar words. Then we propose a novel NMT architecture to leverage the similarity between Thai and Lao. Specifically, besides the prevailing sentence encoder, we introduce an extra similarity lexicon encoder into the conventional encoder-decoder architecture, by which the semantic information carried by the similarity lexicon can be represented. We further provide a simple mechanism in the decoder to balance the information representations delivered from the input sentence and the similarity lexicon. Our approach can fully exploit linguistic similarity carried by the similarity lexicon to improve translation quality. Experimental results demonstrate that our approach achieves significant improvements over the state-of-the-art Transformer baseline system and previous similar works.

scholarly journals The Development of a Comprehensive Data Set for Systematic Studies of Machine Translation

2021 ◽  
pp. 248-262
Author(s):  
Jörg Tiedemann
Keyword(s):  
Machine Translation ◽  
Training Data ◽  
Sufficient Information ◽  
Data Set ◽  
Neural Machine Translation ◽  
High Resource ◽  
Language Groups ◽  
Comprehensive Data ◽  
Parallel Data ◽  
Initial Results

This paper presents our on-going efforts to develop a comprehensive data set and benchmark for machine translation beyond high-resource languages. The current release includes 500GB of compressed parallel data for almost 3,000 language pairs covering over 500 languages and language variants. We present the structure of the data set and demonstrate its use for systematic studies based on baseline experiments with multilingual neural machine translation between Finno-Ugric languages and other language groups. Our initial results show the capabilities of training effective multilingual translation models with skewed training data but also stress the shortcomings with low-resource settings and the difficulties to obtain sufficient information through straightforward transfer from related languages.

scholarly journals Recurrent Stacking of Layers for Compact Neural Machine Translation Models

2019 ◽  
Vol 33 ◽  
pp. 6292-6299 ◽  
Author(s):  
Raj Dabre ◽  
Atsushi Fujita
Keyword(s):  
Machine Translation ◽  
Single Layer ◽  
Training Data ◽  
Neural Machine Translation ◽  
Parallel Corpora ◽  
Translation Quality ◽  
Sequence Generation ◽  
Sequence Modeling ◽  
Back Translation

In encoder-decoder based sequence-to-sequence modeling, the most common practice is to stack a number of recurrent, convolutional, or feed-forward layers in the encoder and decoder. While the addition of each new layer improves the sequence generation quality, this also leads to a significant increase in the number of parameters. In this paper, we propose to share parameters across all layers thereby leading to a recurrently stacked sequence-to-sequence model. We report on an extensive case study on neural machine translation (NMT) using our proposed method, experimenting with a variety of datasets. We empirically show that the translation quality of a model that recurrently stacks a single-layer 6 times, despite its significantly fewer parameters, approaches that of a model that stacks 6 different layers. We also show how our method can benefit from a prevalent way for improving NMT, i.e., extending training data with pseudo-parallel corpora generated by back-translation. We then analyze the effects of recurrently stacked layers by visualizing the attentions of models that use recurrently stacked layers and models that do not. Finally, we explore the limits of parameter sharing where we share even the parameters between the encoder and decoder in addition to recurrent stacking of layers.

scholarly journals Augmenting Neural Machine Translation through Round-Trip Training Approach

2019 ◽  
Vol 9 (1) ◽  
pp. 268-278 ◽  
Author(s):  
Benyamin Ahmadnia ◽  
Bonnie J. Dorr
Keyword(s):  
Machine Translation ◽  
Training Data ◽  
Training Dataset ◽  
Round Trip ◽  
Neural Machine Translation ◽  
Low Resource ◽  
Translation Quality ◽  
High Resource ◽  
Training Approach ◽  
Language Pair

AbstractThe quality of Neural Machine Translation (NMT), as a data-driven approach, massively depends on quantity, quality and relevance of the training dataset. Such approaches have achieved promising results for bilingually high-resource scenarios but are inadequate for low-resource conditions. Generally, the NMT systems learn from millions of words from bilingual training dataset. However, human labeling process is very costly and time consuming. In this paper, we describe a round-trip training approach to bilingual low-resource NMT that takes advantage of monolingual datasets to address training data bottleneck, thus augmenting translation quality. We conduct detailed experiments on English-Spanish as a high-resource language pair as well as Persian-Spanish as a low-resource language pair. Experimental results show that this competitive approach outperforms the baseline systems and improves translation quality.

scholarly journals Knowledge Graphs Effectiveness in Neural Machine Translation Improvement

2020 ◽  
Vol 21 (3) ◽  
Author(s):  
Benyamin Ahmadnia ◽  
Bonnie J. Dorr ◽  
Parisa Kordjamshidi
Keyword(s):  
Machine Translation ◽  
Semantic Representation ◽  
Language Translation ◽  
Semantic Relations ◽  
Training Data ◽  
Target Language ◽  
Neural Machine Translation ◽  
Source Language ◽  
Knowledge Graphs ◽  
Unknown Words

Neural Machine Translation (NMT) systems require a massive amount of Maintaining semantic relations between words during the translation process yields more accurate target-language output from Neural Machine Translation (NMT). Although difficult to achieve from training data alone, it is possible to leverage Knowledge Graphs (KGs) to retain source-language semantic relations in the corresponding target-language translation. The core idea is to use KG entity relations as embedding constraints to improve the mapping from source to target. This paper describes two embedding constraints, both of which employ Entity Linking (EL)---assigning a unique identity to entities---to associate words in training sentences with those in the KG: (1) a monolingual embedding constraint that supports an enhanced semantic representation of the source words through access to relations between entities in a KG; and (2) a bilingual embedding constraint that forces entity relations in the source-language to be carried over to the corresponding entities in the target-language translation. The method is evaluated for English-Spanish translation exploiting Freebase as a source of knowledge. Our experimental results show that exploiting KG information not only decreases the number of unknown words in the translation but also improves translation quality.

Neural machine translation of low-resource languages using SMT phrase pair injection

2020 ◽  
pp. 1-22
Author(s):  
Sukanta Sen ◽  
Mohammed Hasanuzzaman ◽  
Asif Ekbal ◽  
Pushpak Bhattacharyya ◽  
Andy Way
Keyword(s):  
Machine Translation ◽  
Large Scale ◽  
Production Systems ◽  
Statistical Machine Translation ◽  
Training Data ◽  
Original Training ◽  
Neural Machine Translation ◽  
Parallel Corpus ◽  
Low Resource ◽  
Better Than

Abstract Neural machine translation (NMT) has recently shown promising results on publicly available benchmark datasets and is being rapidly adopted in various production systems. However, it requires high-quality large-scale parallel corpus, and it is not always possible to have sufficiently large corpus as it requires time, money, and professionals. Hence, many existing large-scale parallel corpus are limited to the specific languages and domains. In this paper, we propose an effective approach to improve an NMT system in low-resource scenario without using any additional data. Our approach aims at augmenting the original training data by means of parallel phrases extracted from the original training data itself using a statistical machine translation (SMT) system. Our proposed approach is based on the gated recurrent unit (GRU) and transformer networks. We choose the Hindi–English, Hindi–Bengali datasets for Health, Tourism, and Judicial (only for Hindi–English) domains. We train our NMT models for 10 translation directions, each using only 5–23k parallel sentences. Experiments show the improvements in the range of 1.38–15.36 BiLingual Evaluation Understudy points over the baseline systems. Experiments show that transformer models perform better than GRU models in low-resource scenarios. In addition to that, we also find that our proposed method outperforms SMT—which is known to work better than the neural models in low-resource scenarios—for some translation directions. In order to further show the effectiveness of our proposed model, we also employ our approach to another interesting NMT task, for example, old-to-modern English translation, using a tiny parallel corpus of only 2.7K sentences. For this task, we use publicly available old-modern English text which is approximately 1000 years old. Evaluation for this task shows significant improvement over the baseline NMT.

scholarly journals Incorporating Source-Side Phrase Structures into Neural Machine Translation

2019 ◽  
Vol 45 (2) ◽  
pp. 267-292 ◽  
Author(s):  
Akiko Eriguchi ◽  
Kazuma Hashimoto ◽  
Yoshimasa Tsuruoka
Keyword(s):  
Machine Translation ◽  
Syntactic Structure ◽  
Statistical Machine Translation ◽  
Training Data ◽  
Great Success ◽  
Data Set ◽  
Neural Machine Translation ◽  
Proposed Model ◽  
Source Sentence

Neural machine translation (NMT) has shown great success as a new alternative to the traditional Statistical Machine Translation model in multiple languages. Early NMT models are based on sequence-to-sequence learning that encodes a sequence of source words into a vector space and generates another sequence of target words from the vector. In those NMT models, sentences are simply treated as sequences of words without any internal structure. In this article, we focus on the role of the syntactic structure of source sentences and propose a novel end-to-end syntactic NMT model, which we call a tree-to-sequence NMT model, extending a sequence-to-sequence model with the source-side phrase structure. Our proposed model has an attention mechanism that enables the decoder to generate a translated word while softly aligning it with phrases as well as words of the source sentence. We have empirically compared the proposed model with sequence-to-sequence models in various settings on Chinese-to-Japanese and English-to-Japanese translation tasks. Our experimental results suggest that the use of syntactic structure can be beneficial when the training data set is small, but is not as effective as using a bi-directional encoder. As the size of training data set increases, the benefits of using a syntactic tree tends to diminish.

Augmenting training data with syntactic phrasal-segments in low-resource neural machine translation

2021 ◽  
Author(s):  
Kamal Kumar Gupta ◽  
Sukanta Sen ◽  
Rejwanul Haque ◽  
Asif Ekbal ◽  
Pushpak Bhattacharyya ◽  
...  
Keyword(s):  
Machine Translation ◽  
Training Data ◽  
Neural Machine Translation ◽  
Low Resource
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