scholarly journals Improving regional influenza surveillance through a combination of automated outbreak detection methods: the 2015/16 season in France

2017 ◽  
Vol 22 (32) ◽  
Author(s):  
Camille Pelat ◽  
Isabelle Bonmarin ◽  
Marc Ruello ◽  
Anne Fouillet ◽  
Céline Caserio-Schönemann ◽  
...  

The 2014/15 influenza epidemic caused a work overload for healthcare facilities in France. The French national public health agency announced the start of the epidemic – based on indicators aggregated at the national level – too late for many hospitals to prepare. It was therefore decided to improve the influenza alert procedure through (i) the introduction of a pre-epidemic alert level to better anticipate future outbreaks, (ii) the regionalisation of surveillance so that healthcare structures can be informed of the arrival of epidemics in their region, (iii) the standardised use of data sources and statistical methods across regions. A web application was developed to deliver statistical results of three outbreak detection methods applied to three surveillance data sources: emergency departments, emergency general practitioners and sentinel general practitioners. This application was used throughout the 2015/16 influenza season by the epidemiologists of the headquarters and regional units of the French national public health agency. It allowed them to signal the first influenza epidemic alert in week 2016-W03, in Brittany, with 11 other regions in pre-epidemic alert. This application received positive feedback from users and was pivotal for coordinating surveillance across the agency’s regional units.

2017 ◽  
Vol 9 (1) ◽  
Author(s):  
Marc Ruello ◽  
Camille Pelat ◽  
Céline Caserio-Schönemann ◽  
Anne Fouillet ◽  
Isabelle Bonmarin ◽  
...  

ObjectiveTo describe the results of the new organization of influenzasurveillance in France, based on a regional approach.IntroductionIn France, until winter 2014-2015, management and preventiveactions for the control of the flu epidemic were implemented whenthe national incidence of influenza-like illness (ILI) consultationsin general practice was over an epidemic threshold. The 2014-2015influenza epidemic had a major public health impact, particularly inthe elderly, and caused a severe overloading of the health care system,in particular emergency departments (ED) [1]. The epidemic alertemitted by the French National Public Health Agency at the nationallevel was too late for the hospitals to prepare themselves in manyregions.After a national feedback organized in April 2015 with allpartners involved in influenza surveillance and management, it wasrecommended to improve influenza surveillance in France following3 axes: 1) regionalize surveillance so that healthcare structures canadapt to the particular situation of their region; 2) use a pre-epidemicalert level for better anticipating the outbreak; 3) use multiple datasources and multiple outbreak detection methods to strengthen thedetermination of influenza alert level.MethodsA user-friendly web application was developed to provide commondata visualizations and statistical results of outbreak detectionmethods to all the epidemiologists involved in influenza surveillanceat the national level or in the 15 regional units of our agency [2].It relies on 3 data sources, aggregated on a weekly time step: 1) theproportion of ILI among all coded attendances in the ED participatingto the OSCOUR Network [3] ; 2) the proportion of ILI among allcoded visits made by emergency general practitioners (GPs) workingin the SOS Médecins associations [3]; 3) the incidence rate of ILIestimated from a sample of sentinel GPs [4].For each region each week, 3 statistical outbreak detection methodswere applied to the 3 data sources, generating 9 results that werecombined to obtain a weekly regional influenza alarm level. Basedon this alarm level and on other information (e.g.virological data),the epidemiologists then determined the epidemiological status ofeach region as either 1) epidemic-free, 2) in pre/post epidemic or 3)epidemic.The R software was used for programming algorithms and buildingthe web interface (package shiny).ResultsThe epidemiological status of influenza at the regional level wascommunicated through maps published in the weekly influenzareports of the Agency throughout the surveillance season [5].In week 2016-W03, Brittany was the first French region to declarethe influenza epidemic, with nine other regions in pre-epidemic alert.The epidemic then spread over the whole mainland territory. The peakof the epidemic was declared in week 11, the end in week 16.ConclusionsThis regional multi-source approach has been made possible bythe sharing of data visualizations and statistical results through a webapplication. This application helped detecting early the epidemicstart and allowed a reactive communication with the regionalhealth authorities in charge of the organization of health care, themanagement and the setting up of the appropriate preventivemeasures.


2020 ◽  
Vol 25 (7) ◽  
Author(s):  
Anne Fouillet ◽  
Nelly Fournet ◽  
Cécile Forgeot ◽  
Gabrielle Jones ◽  
Alexandra Septfons ◽  
...  

On 27 December 2019, the French Public Health Agency identified a large increase in the number of acute gastroenteritis and vomiting visits, both in emergency departments and in emergency general practitioners’ associations providing house-calls. In parallel, on 26 and 27 December, an unusual number of food-borne events suspected to be linked to the consumption of raw shellfish were reported through the mandatory reporting surveillance system. This paper describes these concomitant outbreaks and the investigations’ results.


Eos ◽  
2021 ◽  
Vol 102 ◽  
Author(s):  
Jenessa Duncombe

“We are basically doing what a public health agency should be doing.”


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