scholarly journals A High-Resolution Map of Singapore’s Terrestrial Ecosystems

Data ◽  
2019 ◽  
Vol 4 (3) ◽  
pp. 116 ◽  
Author(s):  
Gaw ◽  
Yee ◽  
Richards

The natural and semi-natural areas within cities provide important refuges for biodiversity, as well as many benefits to people. To study urban ecology and quantify the benefits of urban ecosystems, we need to understand the spatial extent and configuration of different types of vegetated cover within a city. It is challenging to map urban ecosystems because they are typically small and highly fragmented; thus requiring high resolution satellite images. This article describes a new high-resolution map of land cover for the tropical city-state of Singapore. We used images from WorldView and QuickBird satellites, and classified these images using random forest machine learning and supplementary datasets into 12 terrestrial land classes. Close to 50 % of Singapore’s land cover is vegetated while freshwater fills about 6 %, and the rest is bare or built up. The overall accuracy of the map was 79 % and the class-specific errors are described in detail. Tropical regions such as Singapore have a lot of cloud cover year-round, complicating the process of mapping using satellite imagery. The land cover map provided here will have applications for urban biodiversity studies, ecosystem service quantification, and natural capital assessment.

1996 ◽  
Vol 92 (8) ◽  
pp. 1065-1072 ◽  
Author(s):  
M. F. van Wordragen ◽  
R. L. Weide ◽  
E. Coppoolse ◽  
P. Zabel ◽  
M. Koornneef

Virology ◽  
2020 ◽  
Vol 547 ◽  
pp. 47-56 ◽  
Author(s):  
Dominic Y. Logel ◽  
Paul R. Jaschke

2016 ◽  
Vol 33 (5) ◽  
pp. 1378-1378 ◽  
Author(s):  
Elad Firnberg ◽  
Jason W. Labonte ◽  
Jeffrey J. Gray ◽  
Marc Ostermeier

Genomics ◽  
1995 ◽  
Vol 26 (2) ◽  
pp. 308-317 ◽  
Author(s):  
C.C. Blackburn ◽  
J. Griffith ◽  
G. Morahan

2018 ◽  
Vol 38 (3) ◽  
pp. 240-249 ◽  
Author(s):  
Roger Sayre ◽  
Charlie Frye ◽  
Deniz Karagulle ◽  
Jürg Krauer ◽  
Sean Breyer ◽  
...  

2011 ◽  
Vol 21 (1) ◽  
pp. 19 ◽  
Author(s):  
Catherine Mering ◽  
Franck Chopin

A new method of land cover mapping from satellite images using granulometric analysis is presented here. Discontinuous landscapes such as steppian bushes of semi arid regions and recently growing urban settlements are especially concerned by this study. Spatial organisations of the land cover are quantified by means of the size distribution analysis of the land cover units extracted from high resolution remotely sensed images. A granulometric map is built by automatic classification of every pixel of the image according to the granulometric density inside a sliding neighbourhood. Granulometric mapping brings some advantages over traditional thematic mapping by remote sensing by focusing on fine spatial events and small changes in one peculiar category of the landscape.


Author(s):  
Dongwan Kim ◽  
Joo-Yeon Lee ◽  
Jeong-Sun Yang ◽  
Jun Won Kim ◽  
V. Narry Kim ◽  
...  

AbstractSARS-CoV-2 is a betacoronavirus that is responsible for the COVID-19 pandemic. The genome of SARS-CoV-2 was reported recently, but its transcriptomic architecture is unknown. Utilizing two complementary sequencing techniques, we here present a high-resolution map of the SARS-CoV-2 transcriptome and epitranscriptome. DNA nanoball sequencing shows that the transcriptome is highly complex owing to numerous recombination events, both canonical and noncanonical. In addition to the genomic RNA and subgenomic RNAs common in all coronaviruses, SARS-CoV-2 produces a large number of transcripts encoding unknown ORFs with fusion, deletion, and/or frameshift. Using nanopore direct RNA sequencing, we further find at least 41 RNA modification sites on viral transcripts, with the most frequent motif being AAGAA. Modified RNAs have shorter poly(A) tails than unmodified RNAs, suggesting a link between the internal modification and the 3′ tail. Functional investigation of the unknown ORFs and RNA modifications discovered in this study will open new directions to our understanding of the life cycle and pathogenicity of SARS-CoV-2.HighlightsWe provide a high-resolution map of SARS-CoV-2 transcriptome and epitranscriptome using nanopore direct RNA sequencing and DNA nanoball sequencing.The transcriptome is highly complex owing to numerous recombination events, both canonical and noncanonical.In addition to the genomic and subgenomic RNAs common in all coronaviruses, SARS-CoV-2 produces transcripts encoding unknown ORFs.We discover at least 41 potential RNA modification sites with an AAGAA motif.


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