scholarly journals Transcriptome Profiling of the Pacific Oyster Crassostrea gigas Visceral Ganglia over a Reproduction Cycle Identifies Novel Regulatory Peptides

Marine Drugs ◽  
2021 ◽  
Vol 19 (8) ◽  
pp. 452
Author(s):  
Emilie Réalis-Doyelle ◽  
Julie Schwartz ◽  
Cédric Cabau ◽  
Lorane Le Franc ◽  
Benoit Bernay ◽  
...  
Keyword(s):  
Crassostrea Gigas ◽  
Pacific Oyster ◽  
De Novo ◽  
Regulatory Peptides ◽  
Transcriptome Profiling ◽  
Specific Reference ◽  
Interleukin 17 ◽  
Rna Seq ◽  
Specific Expression ◽  
The Pacific

The neuropeptides involved in the regulation of reproduction in the Pacific oyster (Crassostrea gigas) are quite diverse. To investigate this diversity, a transcriptomic survey of the visceral ganglia (VG) was carried out over an annual reproductive cycle. RNA-seq data from 26 samples corresponding to VG at different stages of reproduction were de novo assembled to generate a specific reference transcriptome of the oyster nervous system and used to identify differentially expressed transcripts. Transcriptome mining led to the identification of novel neuropeptide precursors (NPPs) related to the bilaterian Eclosion Hormone (EH), crustacean female sex hormone/Interleukin 17, Nesfatin, neuroparsin/IGFBP, prokineticins, and urotensin I; to the protostome GNQQN, pleurin, prohormones 3 and 4, prothoracotropic hormones (PTTH), and QSamide/PXXXamide; to the lophotrochozoan CCWamide, CLCCY, HFAamide, and LXRX; and to the mollusk-specific NPPs CCCGS, clionin, FYFY, GNamide, GRWRN, GSWN, GWE, IWMPxxGYxx, LXRYamide, RTLFamide, SLRFamide, and WGAGamide. Among the complete repertoire of NPPs, no sex-biased expression was observed. However, 25 NPPs displayed reproduction stage-specific expression, supporting their involvement in the control of gametogenesis or associated metabolisms.

Transcriptome profiling of the Pacific oyster Crassostrea gigas by Illumina RNA-seq

2015 ◽  
Vol 38 (4) ◽  
pp. 359-365 ◽  
Author(s):  
Hyun-Jeong Lim ◽  
Jong-Sung Lim ◽  
Jeong-Soo Lee ◽  
Beom-Soon Choi ◽  
Dong-Inn Kim ◽  
...  
Keyword(s):  
Crassostrea Gigas ◽  
Pacific Oyster ◽  
Transcriptome Profiling ◽  
Rna Seq ◽  
The Pacific

Development of SNP markers for identification of thermo-resistant families of the Pacific oyster Crassostrea gigas based on RNA-seq

Aquaculture ◽  
2021 ◽  
Vol 539 ◽  
pp. 736618
Author(s):  
Oscar E. Juárez ◽  
Cristina Escobedo-Fregoso ◽  
Roberto Arredondo-Espinoza ◽  
Ana M. Ibarra
Keyword(s):  
Crassostrea Gigas ◽  
Pacific Oyster ◽  
Snp Markers ◽  
Rna Seq ◽  
The Pacific

Phylogenetic analysis of tyrosinase gene family in the Pacific oyster (Crassostrea gigas Thunberg)

2014 ◽  
Vol 36 (2) ◽  
pp. 135-144
Author(s):  
Yu Xue ◽  
Yu Hong ◽  
Kong Lingfeng ◽  
Li Qi
Keyword(s):  
Phylogenetic Analysis ◽  
Gene Family ◽  
Crassostrea Gigas ◽  
Pacific Oyster ◽  
Tyrosinase Gene ◽  
The Pacific

scholarly journals Subchronic exposure to high-density polyethylene microplastics alone or in combination with chlortoluron significantly affected valve activity and daily growth of the Pacific oyster, Crassostrea gigas

2021 ◽  
pp. 105880
Author(s):  
Arno Bringer ◽  
Hélène Thomas ◽  
Emmanuel Dubillot ◽  
Stéphane Le Floch ◽  
Justine Receveur ◽  
...  
Keyword(s):  
Crassostrea Gigas ◽  
High Density Polyethylene ◽  
Pacific Oyster ◽  
High Density ◽  
Daily Growth ◽  
Subchronic Exposure ◽  
The Pacific

scholarly journals Identification and Expression Analysis of the Genes Involved in the Raffinose Family Oligosaccharides Pathway of Phaseolus vulgaris and Glycine max

Plants ◽  
2021 ◽  
Vol 10 (7) ◽  
pp. 1465
Author(s):  
Ramon de Koning ◽  
Raphaël Kiekens ◽  
Mary Esther Muyoka Toili ◽  
Geert Angenon
Keyword(s):  
Common Bean ◽  
Seed Development ◽  
Expression Analysis ◽  
De Novo ◽  
Expression Patterns ◽  
Gene Families ◽  
Rna Seq ◽  
Raffinose Family Oligosaccharides ◽  
Specific Expression ◽  
Raffinose Synthase

Raffinose family oligosaccharides (RFO) play an important role in plants but are also considered to be antinutritional factors. A profound understanding of the galactinol and RFO biosynthetic gene families and the expression patterns of the individual genes is a prerequisite for the sustainable reduction of the RFO content in the seeds, without compromising normal plant development and functioning. In this paper, an overview of the annotation and genetic structure of all galactinol- and RFO biosynthesis genes is given for soybean and common bean. In common bean, three galactinol synthase genes, two raffinose synthase genes and one stachyose synthase gene were identified for the first time. To discover the expression patterns of these genes in different tissues, two expression atlases have been created through re-analysis of publicly available RNA-seq data. De novo expression analysis through an RNA-seq study during seed development of three varieties of common bean gave more insight into the expression patterns of these genes during the seed development. The results of the expression analysis suggest that different classes of galactinol- and RFO synthase genes have tissue-specific expression patterns in soybean and common bean. With the obtained knowledge, important galactinol- and RFO synthase genes that specifically play a key role in the accumulation of RFOs in the seeds are identified. These candidate genes may play a pivotal role in reducing the RFO content in the seeds of important legumes which could improve the nutritional quality of these beans and would solve the discomforts associated with their consumption.

Combined effects of pollutants and salinity on embryo-larval development of the Pacific oyster, Crassostrea gigas

2016 ◽  
Vol 113 ◽  
pp. 31-38 ◽  
Author(s):  
Perrine Gamain ◽  
Patrice Gonzalez ◽  
Jérôme Cachot ◽  
Patrick Pardon ◽  
Nathalie Tapie ◽  
...  
Keyword(s):  
Larval Development ◽  
Crassostrea Gigas ◽  
Pacific Oyster ◽  
Combined Effects ◽  
The Pacific

Differentially methylated gene regions between resistant and susceptible heat-phenotypes of the Pacific oyster Crassostrea gigas

Aquaculture ◽  
2021 ◽  
pp. 736923
Author(s):  
Roberto Arredondo-Espinoza ◽  
Ana M. Ibarra ◽  
Steven B. Roberts ◽  
Maria Teresa Sicard-Gonzalez ◽  
Cristina Escobedo-Fregoso
Keyword(s):  
Crassostrea Gigas ◽  
Pacific Oyster ◽  
The Pacific ◽  
Differentially Methylated Gene
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