scholarly journals Whole-mount in situ hybridization detection of mRNA in GFP-marked Drosophila imaginal disc mosaic clones

Fly ◽  
2008 ◽  
Vol 2 (6) ◽  
pp. 323-325 ◽  
Author(s):  
Adrienne VanZomeren-Dohm ◽  
Ellen Flannery ◽  
Molly Duman-Scheel
Keyword(s):  
In Situ Hybridization ◽  
Imaginal Disc ◽  
Whole Mount ◽  
Hybridization Detection

scholarly journals Whole mount in situ hybridization detection of mRNAs using short LNA containing DNA oligonucleotide probes

RNA ◽  
2010 ◽  
Vol 16 (3) ◽  
pp. 632-637 ◽  
Author(s):  
D. K. Darnell ◽  
S. Stanislaw ◽  
S. Kaur ◽  
P. B. Antin
Keyword(s):  
In Situ Hybridization ◽  
Oligonucleotide Probes ◽  
Whole Mount ◽  
Hybridization Detection

scholarly journals FISHing for chick genes: Triple-label whole-mount fluorescence in situ hybridization detects simultaneous and overlapping gene expression in avian embryos

2004 ◽  
Vol 229 (3) ◽  
pp. 651-657 ◽  
Author(s):  
Nathaniel Denkers ◽  
Pilar García-Villalba ◽  
Christopher K. Rodesch ◽  
Kandice R. Nielson ◽  
Teri Jo Mauch
Keyword(s):  
Gene Expression ◽  
In Situ Hybridization ◽  
Fluorescence In Situ Hybridization ◽  
Avian Embryos ◽  
Overlapping Gene ◽  
Whole Mount

Integrin alpha subunit mRNAs are differentially expressed in early Xenopus embryos

Development ◽  
1993 ◽  
Vol 117 (4) ◽  
pp. 1239-1249 ◽  
Author(s):  
C.A. Whittaker ◽  
D.W. DeSimone
Keyword(s):  
In Situ Hybridization ◽  
Rnase Protection Assay ◽  
Early Embryo ◽  
Mrna Levels ◽  
Rnase Protection ◽  
Dorsal Midline ◽  
Transmembrane Receptors ◽  
Early Embryos ◽  
Whole Mount

Adhesion of cells to extracellular matrix proteins is mediated, in large part, by transmembrane receptors of the integrin family. The identification of specific integrins expressed in early embryos is an important first step to understanding the roles of these receptors in developmental processes. We have used polymerase chain reaction methods and degenerate oligodeoxynucleotide primers to identify and clone Xenopus integrin alpha subunits from neurula-stage (stage 17) cDNA. Partial cDNAs encoding integrin subunits alpha 2, alpha 3, alpha 4, alpha 5, alpha 6 and an alpha IIb-related subunit were cloned and used to investigate integrin mRNA expression in early embryos by RNase protection assay and whole-mount in situ hybridization methods. Considerable integrin diversity is apparent early in development with integrins alpha 2, alpha 3, alpha 4, alpha 5 and alpha 6 each expressed by the end of gastrulation. Both alpha 3 and alpha 5 are expressed as maternal mRNAs. Zygotic expression of alpha 2, alpha 3, alpha 4 and alpha 6 transcripts begins during gastrulation. Integrin alpha 5 is expressed at relatively high levels during cleavage, blastula and gastrula stages suggesting that it may represent the major integrin expressed in the early embryo. We demonstrated previously that integrin beta 1 protein synthesis remains constant following induction of stage 8 animal cap cells with activin (Smith, J. C., Symes, K., Hynes, R. O. and DeSimone, D. W. (1990) Development 108, 289–298.). Here we report that integrin alpha 3, alpha 4 and alpha 6 mRNA levels increase following induction with 10 U/ml activin-A whereas alpha 5, beta 1 and beta 3 mRNA levels remain unchanged. Whole-mount in situ hybridization reveals that alpha 3 mRNAs are expressed by cells of the involuting mesoderm in the dorsal lip region of early gastrulae. As gastrulation proceeds, alpha 3 expression is localized to a stripe of presumptive notochordal cells along the dorsal midline. In neurulae, alpha 3 mRNA is highly expressed in the notochord but becomes progressively more restricted to the caudalmost portion of this tissue as development proceeds from tailbud to tadpole stages. In addition, alpha 3 is expressed in the forebrain region of later stage embryos. These data suggest that integrin-mediated adhesion may be involved in the process of mesoderm involution at gastrulation and the organization of tissues during embryogenesis.

Localization of specific mRNAs in Xenopus embryos by whole-mount in situ hybridization

Development ◽  
1990 ◽  
Vol 110 (2) ◽  
pp. 325-330 ◽  
Author(s):  
A. Hemmati-Brivanlou ◽  
D. Frank ◽  
M.E. Bolce ◽  
B.D. Brown ◽  
H.L. Sive ◽  
...  
Keyword(s):  
In Situ Hybridization ◽  
Antisense Rna ◽  
Muscle Actin ◽  
Xenopus Embryos ◽  
Whole Mount ◽  
Alpha Globin ◽  
Specific Mrnas ◽  
Protein Rich ◽  
Hatching Gland

We have adapted a non-radioactive technique to detect localized mRNAs in whole-mount Xenopus embryos. Synthetic antisense RNA transcribed in the presence of digoxygenin-UTP is used as a probe and is detected via an anti-digoxygenin antibody. We show that localized mRNAs can be detected from late gastrula to tadpole stages and that high as well as low abundance RNAs can be detected. The method was tested on muscle actin and alpha-globin RNAs, whose localization has previously been characterized. In addition, we used the method to determine the distribution of XA-1 RNA, an anterior ectoderm-specific RNA, which we show is expressed in the periphery of the cement gland as well as in the region of the hatching gland. The sequence of an XA-1 cDNA predicts a protein rich in proline and histidine.

In Situ Hybridization: Detection of DNA and RNA

2003 ◽  
pp. 27-46 ◽  
Author(s):  
Long Jin ◽  
Xiang Qian ◽  
Ricardo V. Lloyd
Keyword(s):  
In Situ Hybridization ◽  
Dna And Rna ◽  
Hybridization Detection
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