scholarly journals Technical note: Uncovering the influence of methodological variations on the extractability of iron-bound organic carbon

2021 ◽  
Vol 18 (11) ◽  
pp. 3409-3419
Author(s):  
Ben J. Fisher ◽  
Johan C. Faust ◽  
Oliver W. Moore ◽  
Caroline L. Peacock ◽  
Christian März

Abstract. Association of organic carbon (OC) with reactive iron (FeR) represents an important mechanism by which OC is protected against remineralisation in soils and marine sediments. Recent studies indicate that the molecular structure of organic compounds and/or the identity of associated FeR phases exert a control on the ability of an OC–FeR complex to be extracted by the citrate–bicarbonate–dithionite (CBD) method. However, many variations of the CBD extraction are used, and these are often uncalibrated to each other, rendering comparisons of OC–FeR values extracted via the different methods impossible. Here, we created synthetic ferrihydrite samples coprecipitated with simple organic structures and subjected these to modifications of the most common CBD method. We altered some of the method parameters (reagent concentration, time of the extraction and sample preparation methods) and measured FeR recovery to determine which (if any) modifications affected the release of FeR from the synthetic sample. We provide an assessment of the reducing capacity of Na dithionite in the CBD method (the amount of Fe reduced by a fixed amount of dithionite) and find that the concentration of dithionite deployed can limit OC–FeR extractability for sediments with a high FeR content. Additionally, we show that extending the length of any CBD extraction offers no benefit in removing FeR. Moreover, we demonstrate that for synthetic OC–FeR samples dominated by ferrihydrite, freeze-drying samples can significantly reduce OC–FeR extractability; this appears to be less of an issue for natural marine sediments where natural ageing mechanisms may mimic the freeze-drying process for more stable Fe phases. While our study is not an all-inclusive method comparison and is not aimed at delivering the “perfect” extraction setup, our findings provide a collected summary of critical factors which influence the efficiency of the CBD extraction for OC–FeR. As such, we provide a platform from which OC–FeR values obtained under different methods can be interpreted and future studies of sediment carbon cycling can build upon.

2020 ◽  
Author(s):  
Ben J. Fisher ◽  
Johan C. Faust ◽  
Oliver W. Moore ◽  
Caroline L. Peacock ◽  
Christian März

Abstract. Association of organic carbon (OC) with reactive iron (FeR) represents an important mechanism by which OC is protected against remineralisation in soils and marine sediments. Recent studies indicate that the molecular structure of organic compounds and/or the identity of associated FeR phases exerts a control on the ability of an OC-FeR complex to be extracted by the citrate-bicarbonate-dithionite (CBD) method. While many variations of this method exist in the literature, these are often uncalibrated to each other, rendering comparisons of OC-FeR values extracted by different method iterations impossible. Here, we created a synthetic ferrihdyrite sample coprecipitated with simple organic structures and subjected these to modifications of the most common CBD method. Method parameters (reagent concentration, time of the extraction and sample preparation methods) were altered and FeR recovery measured to determine which (if any) modifications resulted in the greatest release of FeR from the sediment sample. We provide an assessment of the reducing capacity of Na dithionite in the CBD method and find that the concentration of dithionite deployed can limit OC-FeR extractability for sediments with a high FeR content. Additionally, we show that extending the length of any CBD extraction offers no benefit in removing FeR. Finally, we demonstrate that for synthetic OC-FeR samples, the almost universal technique of freeze drying samples can significantly reduce OC-FeR extractability and we offer insight into how this may translate to environmental samples using Arctic Ocean sediments. These results provide a valuable perspective on how the efficiency of this extraction could be improved to provide a more accurate assessment of sediment OC-FeR content. Accurate determinations of OC-FeR in sediments and soils represents an important step in improving our understanding of, and ability to model, the global carbon cycle.


2016 ◽  
Author(s):  
Satoshi Takahama ◽  
Giulia Ruggeri

Abstract. Functional group (FG) analysis provides a means by which functionalization in organic aerosol can be attributed to the abundances of its underlying molecular structures. However, performing this attribution requires additional, unobserved details about the molecular mixture to provide constraints in the estimation process. To address this issue, we present an approach for conceptualizing FG measurements of organic aerosol in terms of its functionalized carbon atoms. This reformulation facilitates estimation of mass recovery and biases in popular carbon-centric metrics that describe the extent of functionalization (such as oxygen to carbon ratio, organic mass to organic carbon mass ratio, and mean carbon oxidation state) for any given set of molecules and FGs analyzed. Furthermore, this approach allows development of parameterizations to more precisely estimate the organic carbon content from measured FG abundance. We use simulated photooxidation products of α-pinene secondary organic aerosol previously reported by Ruggeri et al. (Atmos. Chem. Phys., 16, 4401–4422, 2016) and FG measurements by Fourier Transform Infrared (FT-IR) spectroscopy in chamber experiments by Sax et al. (Aerosol Sci. Tech., 39, 822–830, 2005) to infer the relationships among molecular composition, FG composition, and metrics of organic aerosol functionalization. We find that for this simulated system, ~ 80 % of the carbon atoms should be detected by FGs for which calibration models are commonly developed, and ~ 7 % of the carbon atoms are undetectable by FT-IR analysis because they are not associated with vibrational modes in the infrared. Estimated biases due to undetected carbon fraction for these simulations are used to make adjustments in these carbon-centric metrics such that model-measurement differences are framed in terms of unmeasured heteroatoms (e.g., in hydroperoxide and nitrate groups for the case studied in this demonstration). The formality of this method provides framework for extending FG analysis to not only model-measurement but also instrument intercomparisons in other chemical systems.


2019 ◽  
Vol 192 ◽  
pp. 480-490 ◽  
Author(s):  
Jack Longman ◽  
Martin R. Palmer ◽  
Thomas M. Gernon ◽  
Hayley R. Manners

2021 ◽  
Author(s):  
Dominik Hülse ◽  
James Bradley ◽  
Sebastiaan van de Velde ◽  
Andy Dale ◽  
Sandra Arndt ◽  
...  

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