Linking molecular properties of soil organic carbon to emergent ecosystem functions in a tidally influenced landscape of the Pacific Northwest

Author(s):  
Aditi Sengupta ◽  
Ben Bond-Lamberty ◽  
Albert Rivas-Ubach ◽  
Jianqiu Zheng ◽  
Pubudu Handakumbura ◽  
...  

<p>Coastal landscapes and their terrestrial-aquatic interface (TAI) will be increasingly exposed to short-term tidal inundation due to sea level rise and extreme weather events. These events can generate hot moments of biogeochemical activity and also alter ecosystem structure if occuring frequently. However, such responses of these vulnerable ecosystems to environmental perturbations are poorly understood, limiting our ability to evaluate the contribution of local processes on global scale carbon and nutrient budgets. Here, we evaluated whether and to what degree seawater inundation impacts biogeochemical responses in soils collected along a naturally variable salinity gradient in a first order tidal stream floodplain in the Pacific Northwest. A laboratory incubation experiment simulating episodic inundation was performed to detect the impacts on soil carbon chemistry. We characterized carbon before and after inundation using Fourier Transform Ion Cyclotron Resonance Mass Spectrometry (FTICR-MS), metabolite signatures via Liquid Chromatography-Mass Spectrometry (LC-MS), and high-frequency carbon dioxide (CO<sub>2</sub>) and methane (CH<sub>4</sub>) gas fluxes from intact soil cores. Following three inundation events, we observed significant decreases in the thermodynamic favorability of the remaining organic compounds in soils with high natural salinity as compared to low salinity soils. Low salinity soils showed higher average flux compared to high salinity soils following periodic inundation events. Seawater inundation led to distinct metabolite features in low salinity soils, with surficial soil preferentially getting enriched in phenolic compounds. Biogeochemical transformations inferred from FTICR-MS data showed an increase in total transformations with increasing salinity for soil cores from naturally low salinity exposure sites, likely suggesting higher microbial activity. In conclusion, ecosystem responses in a tidal landscape frequently experiencing seawater inundation preferentially influences terrestrial soils to behave as a carbon source. This response is likely a function of historical salinity gradient-driven molecular-level organic carbon characteristics.</p>

Radiocarbon ◽  
1996 ◽  
Vol 38 (3) ◽  
pp. 597-602 ◽  
Author(s):  
P. E. Damon ◽  
George Burr ◽  
A. N. Peristykh ◽  
G. C. Jacoby ◽  
R. D. D'Arrigo

Accelerator mass spectrometry (AMS) measurement of 25 single-year tree rings from AD 1861–1885 at ca. ±3.5‰ precision shows no evidence of an anomalous 11-yr cycle of 14C near the Arctic Circle in the Mackenzie River area. However, the Δ14C measurements are lower on average by 2.7 ± 0.9 (ō)‰ relative to 14C measurements on tree rings from the Pacific Northwest (Stuiver and Braziunas 1993). We attribute this depression of Δ14C to thawing of the ice and snow cover followed by melting of frozen earth that releases trapped 14C-depleted CO2 to the atmosphere during the short growing season from May through August. Correlation of Δ14C with May–August estimated temperatures yields a correlation index of r = 0.60. The reduction in Δ14C is dominated by seven years of anomalous depletion. These years are 1861, 1867–1869, 1879–1880 and 1883. The years 1867–1869 are coincident with a very strong ENSO event.


2018 ◽  
Vol 62 (2) ◽  
Author(s):  
Armando Alcazar Magana ◽  
Soyoun Ahn ◽  
Connie Bozarth ◽  
Jonathan Shepardson ◽  
Jeffery Morré ◽  
...  

<p class="PlaceholderText1">The occurrence of harmful algal blooms in nutrient-rich freshwater bodies has increased world-wide, including in the Pacific Northwest. Some cyanobacterial genera have the potential to produce secondary metabolites that are highly toxic to humans, livestock and wildlife. Reliable methods for the detection of cyanobacterial toxins with high specificity and low limits of detection are in high demand. Here we test a relatively new hybrid high resolution accurate mass quadrupole time-of-flight mass spectrometry platform (TripleTOF) for the analysis of cyanobacterial toxins in freshwater samples. We developed a new method that allows the quantitative analysis of four commonly observed microcystin congeners (LR, LA, YR, and RR) and anatoxin-a in a 6-min LC run without solid-phase enrichment. Limits of detection for the microcystin congeners (LR, LA, YR, and RR) and anatoxin-a were &lt;5 ng/L (200-fold lower than the guideline value of 1 µg/L as maximum allowable concentration of MC-LR in drinking water). The method was applied for screening freshwaters in the Pacific Northwest during the bloom and post-bloom periods. The use of high resolution mass spectrometry and concomitant high sensitivity detection of specific fragment ions with high mass accuracy provides an integrated approach for the simultaneous identification and quantification of cyanobacterial toxins. The method is sensitive enough for detecting the toxins in single <em>Microcystis </em>colonies.</p>


Soil Horizons ◽  
2001 ◽  
Vol 42 (4) ◽  
pp. 112
Author(s):  
E. Benham ◽  
W. D. Nettleton ◽  
R. Burt ◽  
M. A. Wilson

2018 ◽  
Vol 84 (13) ◽  
Author(s):  
Julia A. Maresca ◽  
Kelsey J. Miller ◽  
Jessica L. Keffer ◽  
Chandran R. Sabanayagam ◽  
Barbara J. Campbell

ABSTRACT Although sunlight is an abundant source of energy in surface environments, less than 0.5% of the available photons are captured by (bacterio)chlorophyll-dependent photosynthesis in plants and bacteria. Metagenomic data indicate that 30 to 60% of the bacterial genomes in some environments encode rhodopsins, retinal-based photosystems found in heterotrophs, suggesting that sunlight may provide energy for more life than previously suspected. However, quantitative data on the number of cells that produce rhodopsins in environmental systems are limited. Here, we use total internal reflection fluorescence microscopy to show that the number of free-living microbes that produce rhodopsins increases along the salinity gradient in the Chesapeake Bay. We correlate this functional data with environmental data to show that rhodopsin abundance is positively correlated with salinity and with indicators of active heterotrophy during the day. Metagenomic and metatranscriptomic data suggest that the microbial rhodopsins in the low-salinity samples are primarily found in Actinobacteria and Bacteroidetes , while those in the high-salinity samples are associated with SAR-11 type Alphaproteobacteria . IMPORTANCE Microbial rhodopsins are common light-activated ion pumps in heterotrophs, and previous work has proposed that heterotrophic microbes use them to conserve energy when organic carbon is limiting. If this hypothesis is correct, rhodopsin-producing cells should be most abundant where nutrients are most limited. Our results indicate that in the Chesapeake Bay, rhodopsin gene abundance is correlated with salinity, and functional rhodopsin production is correlated with nitrate, bacterial production, and chlorophyll a . We propose that in this environment, where carbon and nitrogen are likely not limiting, heterotrophs do not need to use rhodopsins to supplement ATP synthesis. Rather, the light-generated proton motive force in nutrient-rich environments could be used to power energy-dependent membrane-associated processes, such as active transport of organic carbon and cofactors, enabling these organisms to more efficiently utilize exudates from primary producers.


2019 ◽  
Vol 39 (4) ◽  
pp. 452
Author(s):  
Margaret H. Massie ◽  
Todd M. Wilson ◽  
Anita T. Morzillo ◽  
Emilie B. Henderson

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