Quantifying soil denitrification in situ from depth profiles of 15N labelled denitrification products by diffusion-reaction modelling 

Author(s):  
Reinhard Well ◽  
Dominika Lewicka-Szczebak ◽  
Martin Maier ◽  
Amanda Matson

<p>Common field methods for measuring soil denitrification in situ include monitoring the accumulation of <sup>15</sup>N labelled N<sub>2</sub> and N<sub>2</sub>O evolved from <sup>15</sup>N labelled soil nitrate pool in soil surface chambers. Bias of denitrification rates derived from chamber measurements results from subsoil diffusion of <sup>15</sup>N labelled denitrification products, but this can be corrected by diffusion modeling (Well et al., 2019). Moreover, precision of the conventional <sup>15</sup>N gas flux method is low due to the high N<sub>2</sub> background of the atmosphere. An alternative to the closed chamber method is to use concentration gradients of soil gas to quantify their fluxes (Maier &  Schack-Kirchner, 2014). Advantages compared to the closed  chamber method include the facts that (i) time consuming work with closed chambers is replaced by easier sampling of soil gas probes, (ii) depth profiles yield not only the surface flux but also information on the depth distribution of gas production and (iii) soil gas concentrations are higher than chamber gas concentration, resulting in better detectability of <sup>15</sup>N-labelled denitrification products. Here we use this approach for the first time to evaluate denitrification rates derived from depth profiles of <sup>15</sup>N labelled N<sub>2</sub> and N<sub>2</sub>O in the field by closed chamber measurements published previously (Lewicka-Szczebak et al., 2020).</p><p>We compared surface fluxes of N<sub>2</sub> and N<sub>2</sub>O from <sup>15</sup>N labelled microplots using the closed chamber method. Diffusion–based soil gas probes (Schack-Kirchner et al., 1993) were used to sample soil air at the end of each closed chamber measurement. A diffusion-reaction model (Maier et al., 2017) will be  used to fit measured and modelled concentrations of <sup>15</sup>N labelled N<sub>2</sub> and N<sub>2</sub>O. Depth-specific values of denitrification rates and the denitrification product ratio will be obtained from best fits of depth profiles and chamber accumulation, taking into account diffusion of labelled denitrification products to the subsoil (Well et al., 2019).</p><p>Depending on the outcome of this evaluation, the gradient method could be used for continuous monitoring of denitrification in the field based on soil gas probe sampling. This could replace or enhance current approaches by improving the detection limit, facilitating sampling and delivering information on depth-specific denitrification.  </p><p>References:</p><p>Lewicka-Szczebak D, Lewicki MP, Well R (2020) N2O isotope approaches for source partitioning of N2O production and estimation of N2O reduction – validation with the 15N gas-flux method in laboratory and field studies. Biogeosciences, <strong>17</strong>, 5513-5537.</p><p>Maier M, Longdoz B, Laemmel T, Schack-Kirchner H, Lang F (2017) 2D profiles of CO2, CH4, N2O and gas diffusivity in a well aerated soil: measurement and Finite Element Modeling. Agricultural and Forest Meteorology, <strong>247</strong>, 21-33.</p><p>Maier M, Schack-Kirchner H (2014) Using the gradient method to determine soil gas flux: A review. Agricultural and Forest Meteorology, <strong>192</strong>, 78-95.</p><p>Schack-Kirchner H, Hildebrand EE, Wilpert KV (1993) Ein konvektionsfreies Sammelsystem für Bodenluft. Zeitschrift Fur Pflanzenernahrung Und Bodenkunde, <strong>156</strong>, 307-310.</p><p>Well R, Maier M, Lewicka-Szczebak D, Koster JR, Ruoss N (2019) Underestimation of denitrification rates from field application of the N-15 gas flux method and its correction by gas diffusion modelling. Biogeosciences, <strong>16</strong>, 2233-2246.</p><p> </p><p> </p>

2009 ◽  
Vol 93 (5) ◽  
pp. 252-259 ◽  
Author(s):  
Kenji Nakashige ◽  
Masaaki Oikawa ◽  
Takanori Enomoto ◽  
Norio Yoshimura ◽  
Kaoruko Sunaga ◽  
...  

2019 ◽  
Vol 33 (5) ◽  
pp. 437-448 ◽  
Author(s):  
Reinhard Well ◽  
Stefan Burkart ◽  
Anette Giesemann ◽  
Balázs Grosz ◽  
Jan Reent Köster ◽  
...  

2019 ◽  
Vol 16 (10) ◽  
pp. 2233-2246 ◽  
Author(s):  
Reinhard Well ◽  
Martin Maier ◽  
Dominika Lewicka-Szczebak ◽  
Jan-Reent Köster ◽  
Nicolas Ruoss

Abstract. Common methods for measuring soil denitrification in situ include monitoring the accumulation of 15N-labelled N2 and N2O evolved from 15N-labelled soil nitrate pool in closed chambers that are placed on the soil surface. Gas diffusion is considered to be the main transport process in the soil. Because accumulation of gases within the chamber decreases concentration gradients between soil and the chamber over time, the surface efflux of gases decreases as well, and gas production rates are underestimated if calculated from chamber concentrations without consideration of this mechanism. Moreover, concentration gradients to the non-labelled subsoil exist, inevitably causing downward diffusion of 15N-labelled denitrification products. A numerical 3-D model for simulating gas diffusion in soil was used in order to determine the significance of this source of error. Results show that subsoil diffusion of 15N-labelled N2 and N2O – and thus potential underestimation of denitrification derived from chamber fluxes – increases with chamber deployment time as well as with increasing soil gas diffusivity. Simulations based on the range of typical soil gas diffusivities of unsaturated soils showed that the fraction of N2 and N2O evolved from 15N-labelled NO3- that is not emitted at the soil surface during 1 h chamber closing is always significant, with values up to >50 % of total production. This is due to accumulation in the pore space of the 15N-labelled soil and diffusive flux to the unlabelled subsoil. Empirical coefficients to calculate denitrification from surface fluxes were derived by modelling multiple scenarios with varying soil water content. Modelling several theoretical experimental set-ups showed that the fraction of produced gases that are retained in soil can be lowered by lowering the depth of 15N labelling and/or increasing the length of the confining cylinder. Field experiments with arable silt loam soil for measuring denitrification with the 15N gas flux method were conducted to obtain direct evidence for the incomplete surface emission of gaseous denitrification products. We compared surface fluxes of 15N2 and 15N2O from 15N-labelled micro-plots confined by cylinders using the closed-chamber method with cylinders open or closed at the bottom, finding 37 % higher surface fluxes with the bottom closed. Modelling fluxes of this experiment confirmed this effect, however with a higher increase in surface flux of 89 %. From our model and experimental results we conclude that field surface fluxes of 15N-labelled N2 and N2O severely underestimate denitrification rates if calculated from chamber accumulation only. The extent of this underestimation increases with closure time. Underestimation also occurs during laboratory incubations in closed systems due to pore space accumulation of 15N-labelled N2 and N2O. Due to this bias in past denitrification measurements, denitrification in soils might be more relevant than assumed to date. Corrected denitrification rates can be obtained by estimating subsurface flux and storage with our model. The observed deviation between experimental and modelled subsurface flux revealed the need for refined model evaluation, which must include assessment of the spatial variability in diffusivity and production and the spatial dimension of the chamber.


Author(s):  
Fuliang Jiang ◽  
Xiaoli Wang ◽  
Shuai Zhang ◽  
Xiangyang Li ◽  
Changshou Hong

The closed chamber method is widely used in measuring radon exhalation rate, which can avoid the error caused by the leakage and anti-diffusion phenomena. Firstly, considering the actual situation that uranium ore is difficult to obtain and have a high radioactivity, the uranium-like rock was made according to the similarity theory. Secondly, the diffusion length and intrinsic radon exhalation rate were obtained by using the closed chamber method. Thirdly, the theoretical values of radon exhalation rate made by uranium-like ore block were calculated, compared with the measured values. This study shows that the uranium-like rock block made by the best mass ratio is helpful for the subsequent experiment, and the error between the theoretical calculation and the measured value is no more than 9.14%. This indicates it is reliable to estimate radon exhalation rate by diffusion length and intrinsic radon exhalation rate and can also provide a foundation for rapidly gaining radon exhalation rate of the same type material by the closed chamber method. This study can further promote the study of the radon exhalation rate under the complex physical conditions and then better guide the protection work of radon radiation in underground mining.


2016 ◽  
Vol 181 (1) ◽  
pp. 21-30 ◽  
Author(s):  
Jona Luther-Mosebach ◽  
Kira Kalinski ◽  
Alexander Gröngröft ◽  
Annette Eschenbach

Geofluids ◽  
2019 ◽  
Vol 2019 ◽  
pp. 1-19 ◽  
Author(s):  
Horst Kämpf ◽  
Alena Sophie Broge ◽  
Pouria Marzban ◽  
Masoud Allahbakhshi ◽  
Tobias Nickschick

This study presents the results of gas flux measurements of cold, mantle-derived CO2 release at the Bublák mofette field (BMF), located inside of the N-S directed Počátky Plesná fault zone (PPFZ). The PPFZ is presently seismically active, located in the eastern part of the Cheb Basin, western Eger Rift, Central Europe. The goal of the work was to identify the linkage between tectonics and gas flux. The investigated area has a size of 0,43 km2 in which 1.115 locations have been measured. Besides classical soil CO2 gas flux measurements using the closed chamber method (West Systems), drone-based orthophotos were used in combination with knowledge of plant zonation to find zones of high degassing in the agriculturally unused part of the BMF. The highest observed soil CO2 gas flux is 177.926,17 g m-2 d-1, and the lowest is 0,28 g m-2 d-1. Three statistical methods were used for the calculation of the gas flux: arithmetic mean, kriging, and trans-Gaussian kriging. The average CO2 soil degassing of the BMF is 30 t d-1 for an area of 0,43 km2. Since the CO2 soil degassing of the Hartoušov mofette field (HMF) amounts to 23 t d-1 for an area of 0,35 km2, the average dry degassing values of the BMF and HMF are in the same magnitude of order. The amount of CO2 flux from wet mofettes is 3 t d-1 for the BMF and 0,6 t d-1 for the HMF. It was found that the degassing in the BMF and HMF is not in accordance with the pull-apart basin interpretation, based on the direction of degassing as well as topography and sediment fill of the suggested basins. En-echelon faults inside of the PPFZ act as fluid channels to depth (CO2 conduits). These structures inside the PPFZ show beginning faulting and act as tectonic control of CO2 degassing.


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