Underground mining has caused drastic disturbances to regional ecosystems and soil nutrients. Understanding the 3D spatial distribution of soil organic matter in coal arable land is crucial for agricultural production and environmental management. However, little research has been done on the three-dimensional modeling of soil organic matter. In this study, 3D kriging interpolation method and 3D stochastic simulation method were used to develop the 3D model of soil organic matter , and the root-mean-square error (RMSE) and mean error (ME) were used as evaluation indexes to compare the simulation accuracy of the two methods. Results showed that the spatial distribution of soil organic matter obtained by using 3D kriging interpolation method is relatively smooth, which reduce the difference of spatial data; while the spatial distribution of soil organic matter obtained by using 3D stochastic simulation method is relatively discrete and highlights the volatility of spatial distribution of raw data, the RMSE obtained by 3D kriging interpolation method and 3D stochastic simulation method respectively is 2.7711 g/kg and 1.8369 g/kg. The prediction accuracy of organic matter interpolation obtained by 3D stochastic simulation method is higher than that by 3D kriging interpolation method; so the 3D stochastic simulation method can reflect the spatial distribution characteristics of soil organic matter more realistically, and more suitable for 3D modeling of soil organic matter. According to the 3D modeling of soil organic matter, the content of soil organic matter has obvious spatial difference in different soil depth（0-20 cm、20-40 cm、40-60 cm） and decreases with the increase of soil depth; The result also showed that the content of soil organic matter decreased rapidly from the upper slope to the middle slope, and gradually increased from the middle slope to the bottom, so the soil organic matter content was obviously lost in the middle slope. This result may provide useful data for land reclamation and ecological reconstruction in coal mining subsidence area.