scholarly journals Peer Review #2 of "Genome-wide identification and characterization of aquaporin gene family in Beta vulgaris (v0.1)"

2017 ◽  
Keyword(s):  
Gene Family ◽  
Peer Review ◽  
Beta Vulgaris ◽  
Genome Wide ◽  
Aquaporin Gene ◽  
Identification And Characterization

scholarly journals Genome-wide identification and characterization of aquaporin gene family in Beta vulgaris

PeerJ ◽  
2017 ◽  
Vol 5 ◽  
pp. e3747 ◽  
Author(s):  
Weilong Kong ◽  
Shaozong Yang ◽  
Yulu Wang ◽  
Mohammed Bendahmane ◽  
Xiaopeng Fu
Keyword(s):  
Sugar Beet ◽  
Beta Vulgaris ◽  
Growth And Development ◽  
Phylogenetic Analyses ◽  
Rna Seq ◽  
Reference Base ◽  
Genome Wide ◽  
Aquaporin Gene ◽  
Identification And Characterization

Aquaporins (AQPs) are essential channel proteins that execute multi-functions throughout plant growth and development, including water transport, uncharged solutes uptake, stress response, and so on. Here, we report the first genome-wide identification and characterization AQP (BvAQP) genes in sugar beet (Beta vulgaris), an important crop widely cultivated for feed, for sugar production and for bioethanol production. Twenty-eight sugar beet AQPs (BvAQPs) were identified and assigned into five subfamilies based on phylogenetic analyses: seven of plasma membrane (PIPs), eight of tonoplast (TIPs), nine of NOD26-like (NIPs), three of small basic (SIPs), and one of x-intrinsic proteins (XIPs). BvAQP genes unevenly mapped on all chromosomes, except on chromosome 4. Gene structure and motifs analyses revealed that BvAQP have conserved exon-intron organization and that they exhibit conserved motifs within each subfamily. Prediction of BvAQPs functions, based on key protein domains conservation, showed a remarkable difference in substrate specificity among the five subfamilies. Analyses of BvAQPs expression, by mean of RNA-seq, in different plant organs and in response to various abiotic stresses revealed that they were ubiquitously expressed and that their expression was induced by heat and salt stresses. These results provide a reference base to address further the function of sugar beet aquaporins and to explore future applications for plants growth and development improvements as well as in response to environmental stresses.

Sign in / Sign up

Export Citation Format

Share Document