scholarly journals Spiders did not repeatedly gain, but repeatedly lost, foraging webs

Author(s):  
Jonathan A Coddington ◽  
Ingi Agnarsson ◽  
Chris Hamilton ◽  
Jason E Bond

Much genomic-scale, especially transcriptomic, data on spider phylogeny has accumulated in the last few years. These data have recently been used to investigate the diverse architectures and the origin of spider webs, concluding that the ancestral spider spun no foraging web, that spider webs evolved de novo 10-14 times, and that the orb web evolved at least three times. In fact, these findings principally result from inappropriate phylogenetic methodology, specifically coding the absence of webs as logically equivalent, and homologous to, 10 other observable (i.e. not absent) web architectures. “Absence” of webs is simply inapplicable data. To be analyzed properly by character optimization algorithms, it must be coded as “?” or “-” because these codes, and these alone, are handled differently by such algorithms. Additional problems include critical misspellings of taxon names from one analysis to the next (dropping even one taxon affects taxon sampling and results), and mistakes in spider natural history. In sum, methodological error: 1) causes character optimization algorithms to produce illogical results, and 2) does not distinguish absence from secondary loss. Proper methodology and corrected data instead imply that foraging webs are primitive for spiders and that webs have been lost ~5-7 times, not gained 10-14 times. The orb web, specifically, may be homologous (originated only once) although lost 2-6 times.

2018 ◽  
Author(s):  
Jonathan A Coddington ◽  
Ingi Agnarsson ◽  
Chris Hamilton ◽  
Jason E Bond

Much genomic-scale, especially transcriptomic, data on spider phylogeny has accumulated in the last few years. These data have recently been used to investigate the diverse architectures and the origin of spider webs, concluding that the ancestral spider spun no foraging web, that spider webs evolved de novo 10-14 times, and that the orb web evolved at least three times. In fact, these findings principally result from inappropriate phylogenetic methodology, specifically coding the absence of webs as logically equivalent, and homologous to, 10 other observable (i.e. not absent) web architectures. “Absence” of webs is simply inapplicable data. To be analyzed properly by character optimization algorithms, it must be coded as “?” or “-” because these codes, and these alone, are handled differently by such algorithms. Additional problems include critical misspellings of taxon names from one analysis to the next (dropping even one taxon affects taxon sampling and results), and mistakes in spider natural history. In sum, methodological error: 1) causes character optimization algorithms to produce illogical results, and 2) does not distinguish absence from secondary loss. Proper methodology and corrected data instead imply that foraging webs are primitive for spiders and that webs have been lost ~5-7 times, not gained 10-14 times. The orb web, specifically, may be homologous (originated only once) although lost 2-6 times.


PeerJ ◽  
2019 ◽  
Vol 7 ◽  
pp. e6703 ◽  
Author(s):  
Jonathan A. Coddington ◽  
Ingi Agnarsson ◽  
Chris A. Hamilton ◽  
Jason E. Bond

Much genomic-scale, especially transcriptomic, data on spider phylogeny has accumulated in the last few years. These data have recently been used to investigate the diverse architectures and the origin of spider webs, concluding that the ancestral spider spun no foraging web, that spider webs evolvedde novo10–14 times, and that the orb web evolved at least three times. These findings in fact result from a particular phylogenetic character coding strategy, specifically coding theabsenceof webs as logically equivalent, and homologous to, 10 other observable (i.e., not absent) web architectures. “Absence” of webs should be regarded as inapplicable data. To be analyzed properly by character optimization algorithms, it should be coded as “?” because these codes—or their equivalent—are handled differently by such algorithms. Additional problems include critical misspellings of taxon names from one analysis to the next (misspellings cause some optimization algorithms to drop terminals, which affects taxon sampling and results), and mistakes in spider natural history. In sum, the method causes character optimization algorithms to produce counter-intuitive results, and does not distinguish absence from secondary loss. Proper treatment of missing entries and corrected data instead imply that foraging webs are primitive for spiders and that webs have been lost ∼5–7 times, not gained 10–14 times. The orb web, specifically, may be homologous (originated only once) although lost 2–6 times.


2007 ◽  
Vol 55 (1) ◽  
pp. 9 ◽  
Author(s):  
Dinesh Rao ◽  
Ken Cheng ◽  
Marie E. Herberstein

A long-running debate in the spider literature concerns the function of the extra silk decorations in some spider webs. These decorations are appended to the web and constitute a highly visible signal, which is inconsistent with the trend towards web invisibility. Despite the sustained attention of researchers, the exact function of these decorations is yet to be understood. While most studies have focussed on testing particular hypotheses, there has been a dearth of natural history data regarding web decorations in field conditions. In this study we present baseline data regarding the influence of seasonality, microhabitat characteristics and ecology on the presence of web decorations in an Australian orb web spider, Argiope keyserlingi. In particular, we show that there is preference among spiders to build their webs between bushes and to face the south-east, but this preference does not influence decoration building.


Data in Brief ◽  
2021 ◽  
pp. 107536
Author(s):  
Anita Mann ◽  
Naresh Kumar ◽  
Ashwani Kumar ◽  
Charu Lata ◽  
Arvind Kumar ◽  
...  

2017 ◽  
Vol 18 (1) ◽  
Author(s):  
Sergio Gonzalez ◽  
Bernardo Clavijo ◽  
Máximo Rivarola ◽  
Patricio Moreno ◽  
Paula Fernandez ◽  
...  

2019 ◽  
Vol 286 (1896) ◽  
pp. 20182684 ◽  
Author(s):  
Sarah Lemer ◽  
Rüdiger Bieler ◽  
Gonzalo Giribet

Bivalvia has been the subject of extensive recent phylogenetic work to attempt resolving either the backbone of the bivalve tree using transcriptomic data, or the tips using morpho-anatomical data and up to five genetic markers. Yet the first approach lacked decisive taxon sampling and the second failed to resolve many interfamilial relationships, especially within the diverse clade Imparidentia. Here we combine dense taxon sampling with 108 deep-sequenced Illumina-based transcriptomes to provide resolution in nodes that required additional study. We designed specific data matrices to address the poorly resolved relationships within Imparidentia. Our results support the overall backbone of the bivalve tree, the monophyly of Bivalvia and all its main nodes, although the monophyly of Protobranchia remains less clear. Likewise, the inter-relationships of the six main bivalve clades were fully supported. Within Imparidentia, resolution increases when analysing Imparidentia-specific matrices. Lucinidae, Thyasiridae and Gastrochaenida represent three early branches. Gastrochaenida is sister group to all remaining imparidentians, which divide into six orders. Neoheterodontei is always fully supported, and consists of Sphaeriida, Myida and Venerida, with the latter now also containing Mactroidea, Ungulinoidea and Chamidae, a family particularly difficult to place in earlier work. Overall, our study, by using densely sampled transcriptomes, provides the best-resolved bivalve phylogeny to date.


Cladistics ◽  
2020 ◽  
Author(s):  
Robert J. Kallal ◽  
Siddharth S. Kulkarni ◽  
Dimitar Dimitrov ◽  
Ligia R. Benavides ◽  
Miquel A. Arnedo ◽  
...  

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