scholarly journals Decision letter: A simple and effective F0 knockout method for rapid screening of behaviour and other complex phenotypes

2020 ◽  
Author(s):  
Darius Balciunas
2020 ◽  
Author(s):  
François Kroll ◽  
Gareth T Powell ◽  
Marcus Ghosh ◽  
Paride Antinucci ◽  
Timothy J Hearn ◽  
...  

ABSTRACTHundreds of human genes are associated with neurological diseases, but translation into tractable biological mechanisms is lagging. Larval zebrafish are an attractive model to investigate genetic contributions to neurological diseases. However, current CRISPR-Cas9 methods are difficult to apply to large genetic screens studying behavioural phenotypes. To facilitate rapid genetic screening, we developed a simple sequencing-free tool to validate gRNAs and a highly effective CRISPR-Cas9 method capable of converting >90% of injected embryos directly into F0 biallelic knockouts. We demonstrate that F0 knockouts reliably recapitulate complex mutant phenotypes, such as altered molecular rhythms of the circadian clock, escape responses to irritants, and multi-parameter day-night locomotor behaviours. The technique is sufficiently robust to knockout multiple genes in the same animal, for example to create the transparent triple knockout crystal fish for imaging. Our F0 knockout method cuts the experimental time from gene to behavioural phenotype in zebrafish from months to one week.


eLife ◽  
2021 ◽  
Vol 10 ◽  
Author(s):  
François Kroll ◽  
Gareth T Powell ◽  
Marcus Ghosh ◽  
Gaia Gestri ◽  
Paride Antinucci ◽  
...  

Hundreds of human genes are associated with neurological diseases, but translation into tractable biological mechanisms is lagging. Larval zebrafish are an attractive model to investigate genetic contributions to neurological diseases. However, current CRISPR-Cas9 methods are difficult to apply to large genetic screens studying behavioural phenotypes. To facilitate rapid genetic screening, we developed a simple sequencing-free tool to validate gRNAs and a highly effective CRISPR-Cas9 method capable of converting >90% of injected embryos directly into F0 biallelic knockouts. We demonstrate that F0 knockouts reliably recapitulate complex mutant phenotypes, such as altered molecular rhythms of the circadian clock, escape responses to irritants, and multi-parameter day-night locomotor behaviours. The technique is sufficiently robust to knockout multiple genes in the same animal, for example to create the transparent triple knockout crystal fish for imaging. Our F0 knockout method cuts the experimental time from gene to behavioural phenotype in zebrafish from months to one week.


2020 ◽  
Author(s):  
François Kroll ◽  
Gareth T Powell ◽  
Marcus Ghosh ◽  
Gaia Gestri ◽  
Paride Antinucci ◽  
...  

1970 ◽  
Vol 102 (2) ◽  
pp. 237-237
Author(s):  
R. M. McDonald

Planta Medica ◽  
2009 ◽  
Vol 75 (09) ◽  
Author(s):  
K Ndjoko Ioset ◽  
S Vargas ◽  
AE Hay ◽  
JR Ioset ◽  
K Hostettmann
Keyword(s):  

1964 ◽  
Vol 11 (02) ◽  
pp. 506-512 ◽  
Author(s):  
V. A Lovric ◽  
J Margolis

SummaryAn adaptation of “kaolin clotting time” and prothrombin time for use on haemolysed capillary blood provided simple and sensitive screening tests suitable for use in infants and children. A survey of three year’s experience shows that these are reliable routine laboratory tests for detection of latent coagulation disorders.


2018 ◽  
Author(s):  
Kristina Reinmets ◽  
Amin Dehkharghani ◽  
Jeffrey S. Guasto ◽  
Stephen Fuchs

<div>Fungal adhesion is fundamental to processes ranging from</div><div>infection to food production yet, robust, population-scale</div><div>quantification methods for yeast surface adhesion are lacking. We developed a microfluidic assay to distinguish the effects of genetic background and solution conditions on adhesion. This approach will enable the rapid screening of yeast adhesive properties for anti-fouling surfaces and a host of other applications.</div>


2020 ◽  
Author(s):  
Nidhi Gour ◽  
Bharti Koshti

Aggregation of amyloid beeta 1-42 (Aβ<sub>42</sub>) peptide causes the formation of clustered deposits knows as amyloid plaques in the brain which leads to neuronal dysfunction and memory loss and associated with many neurological disorders including Alzheimer’s and Parkinson’s. Aβ<sub>42</sub> has core structural motif with phenylalanine at the 19 and 20 positions. The diphenylalanine (FF) residue plays a crucial role in the formation of amyloid fibers and serves as model peptide for studying Aβ<sub>42 </sub>aggregation. FF self-assembles to well-ordered tubular morphology via aromatic pi-pi stackings. Our studies, suggest that the aromatic rings present in the anti-amyloidogenic compounds may interact with the pi-pi stacking interactions present in the FF. Even the compounds which do not have aromatic rings, like cyclodextrin and cucurbituril show anti-amyloid property due to the binding of aromatic ring inside the guest cavity. Hence, our studies also suggest that compounds which may have a functional moiety capable of interacting with the aromatic stacking interactions might be tested for their anti-amyloidogenic properties. Further, in this manuscript, we have proposed two novel nanoparticle based assays for the rapid screening of amyloid inhibitors. In the first assay, interaction between biotin-tagged FF peptide and the streptavidin labelled gold nanoparticles (s-AuNPs) were used. In another assay, thiol-Au interactions were used to develop an assay for detection of amyloid inhibitors. It is envisaged that the proposed analytical method will provide a simple, facile and cost effective technique for the screening of amyloid inhibitors and may be of immense practical implications to find the therapeutic remedies for the diseases associated with the protein aggregation.


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