scholarly journals Small Longest Tandem Scattered Subsequences

2021 ◽  
Vol 31 (1) ◽  
pp. 79-110
Author(s):  
Luıs Russo ◽  
◽  
Alexandre Francisco ◽  

We consider the problem of identifying tandem scattered subsequences within a string. Our algorithm identifies a longest subsequence which occurs twice without overlap in a string. This algorithm is based on the Hunt-Szymanski algorithm, therefore its performance improves if the string is not self similar, which occurs naturally on strings over large alphabets. Our algorithm relies on new results for data structures that support dynamic longest increasing sub-sequences. In the process we also obtain improved algorithms for the decremental string comparison problem.

2010 ◽  
Vol 21 (06) ◽  
pp. 925-939 ◽  
Author(s):  
PING-HUI HSU ◽  
KUAN-YU CHEN ◽  
KUN-MAO CHAO

We study the problem of finding all maximal approximate gapped palindromes in a string. More specifically, given a string S of length n, a parameter q ≥ 0 and a threshold k > 0, the problem is to identify all substrings in S of the form uvw such that (1) the Levenshtein distance between ur and w is at most k, where ur is the reverse of u and (2) v is a string of length q. The best previous work requires O(k2n) time. In this paper, we propose an O(kn)-time algorithm for this problem by utilizing an incremental string comparison technique. It turns out that the core technique actually solves a more general incremental string comparison problem that allows the insertion, deletion, and substitution of multiple symbols.


1994 ◽  
Vol 9 (3) ◽  
pp. 127
Author(s):  
X.-B. Lu ◽  
F. Stetter
Keyword(s):  

2006 ◽  
Vol 20 ◽  
pp. 1-4
Author(s):  
A. Nusser
Keyword(s):  

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