Bulk and spatially resolved extracellular metabolomics of free-living nitrogen fixation

Soil microorganisms drive ecosystem function, but challenges of scale between microbe and ecosystem hinder our ability to accurately quantify and predictively model the soil microbe-ecosystem function relationship. Quantifying this relationship necessitates studies that systematically characterize multi-omics of soil microorganisms and their activity across sampling scales from spatially resolved to bulk measures, and structural complexity, from liquid pure culture to in situ. To address this need, we cultured two diazotrophic bacteria in liquid and solid media, with and without nitrogen (N) to quantify differences in extracellular metabolites associated with nitrogen fixation under increasing environmental structural complexity. We also quantified extracellular metabolites across sampling scales including bulk sampling via GC-MS analysis and spatially resolved analysis via MALDI mass spectrometry imaging. We found extracellular production of inorganic and organic N during free-living nitrogen fixation activity, highlighting a key mechanism of terrestrial N contributions from this process. Additionally, our results emphasize the need to consider the structural complexity of the environment and spatial scale when quantifying microbial activity. We found differences in metabolite profiles between culture conditions, supporting previous work indicating environmental structure influences microbial function, and across scales, underscoring the need to quantify microbial scale conditions to accurately interpret microbial function.

Impacts of Logging-Associated Compaction on Forest Soils: A Meta-Analysis

Soil compaction associated with mechanized wood harvesting can long-lastingly disturb forest soils, ecosystem function, and productivity. Sustainable forest management requires precise and deep knowledge of logging operation impacts on forest soils, which can be attained by meta-analysis studies covering representative forest datasets. We performed a meta-analysis on the impact of logging-associated compaction on forest soils microbial biomass carbon (MBC), bulk density, total porosity, and saturated hydraulic conductivity (Ksat) affected by two management factors (machine weight and passage frequency), two soil factors (texture and depth), and the time passed since the compaction event. Compaction significantly decreased soil MBC by −29.5% only in subsoils (>30 cm). Overall, compaction increased soil bulk density by 8.9% and reduced total porosity and Ksat by −10.1 and −40.2%, respectively. The most striking finding of this meta-analysis is that the greatest disturbance to soil bulk density, total porosity, and Ksat occurs after very frequent (>20) machine passages. This contradicts the existing claims that most damage to forest soils happens after a few machine passages. Furthermore, the analyzed physical variables did not recover to the normal level within a period of 3–6 years. Thus, altering these physical properties can disturb forest ecosystem function and productivity, because they play important roles in water and air supply as well as in biogeochemical cycling in forest ecosystems. To minimize the impact, we recommend the selection of suitable logging machines and decreasing the frequency of machine passages as well as logging out of rainy seasons especially in clayey soils. It is also very important to minimize total skid trail coverage for sustainable forest management.