The Network Analysis Profiler (NAP v2.0): a web tool for visual topological comparison between multiple networks

In this article we present the Network Analysis Profiler (NAP v2.0), a web tool to directly compare the topological features of multiple networks simultaneously. NAP is written in R and Shiny and currently offers both 2D and 3D network visualisation, as well as simultaneous visual comparisons of node- and edge-based topological features as bar charts or scatterplot matrix. NAP is fully interactive, and users can easily export and visualise the intersection between any pair of networks using Venn diagrams or a 2D and a 3D multi-layer graph-based visualisation. NAP supports weighted, unweighted, directed, undirected and bipartite graphs.

The Network Analysis Profiler (NAP v2.0): a web tool for visual topological comparison between multiple networks

In this article we present the Network Analysis Profiler (NAP v2.0), a web tool to directly compare the topological features of multiple networks simultaneously. NAP is written in R and Shiny and currently offers both 2D and 3D network visualisation, as well as simultaneous visual comparisons of node- and edge-based topological features as bar charts or scatterplot matrix. NAP is fully interactive, and users can easily export and visualise the intersection between any pair of networks using Venn diagrams or a 2D and a 3D multi-layer graph-based visualisation. NAP supports weighted, unweighted, directed, undirected and bipartite graphs.

The Network Analysis Profiler (NAP v2.0): A web tool for visual topological comparison between multiple networks

ABSTRACTIn this article we present the Network Analysis Profiler (NAP v2.0), a web tool to directly compare the topological features of multiple networks simultaneously. NAP is written in R and Shiny and currently offers both 2D and 3D network visualization as well as simultaneous visual comparisons of node- and edge-based topological features both as bar charts or as a scatterplot matrix. NAP is fully interactive and users can easily export and visualize the intersection between any pair of networks using Venn diagrams or a 2D and a 3D multi-layer graph-based visualization. NAP supports weighted, unweighted, directed, undirected and bipartite graphs and is available at: http://bib.fleming.gr:3838/NAP/. Its code can be found at: https://github.com/PavlopoulosLab/NAP

Single view vs. multiple views scatterplots

<span lang="EN-US">Among all the available visualization tools, the scatterplot has been deeply analyzed through the years and many researchers investigated how to improve this tool to face new challenges. The scatterplot visualization diagram is considered one of the most functional among the variety of data visual representations, due to its relative simplicity compared to other multivariable visualization techniques. Even so, one of the most significant and unsolved challenge in data visualization consists in effectively displaying datasets with many attributes or dimensions, such as multidimensional or multivariate ones. The focus of this research is to compare the single view and the multiple views visualization paradigms for displaying multivariable dataset using scatterplots. A multivariable scatterplot has been developed as a web application to provide the single view tool, whereas for the multiple views visualization, the ScatterDice web app has been slightly modified and adopted as a traditional, yet interactive, scatterplot matrix. Finally, a taxonomy of tasks for visualization tools has been chosen to define the use case and the tests to compare the two paradigms.</span>

Feature-Rich, GPU-Assisted Scatterplots for Millions of Call Events

The contact center industry represents a large proportion of many country’s economies. For example, 4% of the entire United States and UK’s working population is employed in this sector. As in most modern industries, contact centers generate gigabytes of operational data that require analysis to provide insight and to improve efficiency. Visualization is a valuable approach to data analysis, enabling trends and correlations to be discovered, particularly when using scatterplots. We present a feature-rich application that visualizes large call center data sets using scatterplots that support millions of points. The application features a scatterplot matrix to provide an overview of the call center data attributes, animation of call start and end times, and utilizes both the CPU and GPU acceleration for processing and filtering. We illustrate the use of the Open Computing Language (OpenCL) to utilize a commodity graphics card for the fast filtering of fields with multiple attributes. We demonstrate the use of the application with millions of call events from a month’s worth of real-world data and report domain expert feedback from our industry partner.

Searching for best lower dimensional visualization angles for high dimensional RNA-Seq data

The accumulation of RNA sequencing (RNA-Seq) gene expression data in recent years has resulted in large and complex data sets of high dimensions. Exploratory analysis, including data mining and visualization, reveals hidden patterns and potential outliers in such data, but is often challenged by the high dimensional nature of the data. The scatterplot matrix is a commonly used tool for visualizing multivariate data, and allows us to view multiple bivariate relationships simultaneously. However, the scatterplot matrix becomes less effective for high dimensional data because the number of bivariate displays increases quadratically with data dimensionality. In this study, we introduce a selection criterion for each bivariate scatterplot and design/implement an algorithm that automatically scan and rank all possible scatterplots, with the goal of identifying the plots in which separation between two pre-defined groups is maximized. By applying our method to a multi-experimentArabidopsisRNA-Seq data set, we were able to successfully pinpoint the visualization angles where genes from two biological pathways are the most separated, as well as identify potential outliers.