A continuum theory for mineral solid solutions undergoing chemo-mechanical processes

Recent studies on metamorphic petrology as well as microstructural observations suggest the influence of mechanical effects upon chemically active metamorphic minerals. Thus, the understanding of such a coupling is crucial to describe the dynamics of geomaterials. In this effort, we derive a thermodynamically consistent framework to characterize the evolution of chemically active minerals. We model the metamorphic mineral assemblages as a solid-species solution where the species mass transport and chemical reaction drive the stress generation process. The theoretical foundations of the framework rely on modern continuum mechanics, thermodynamics far from equilibrium, and the phase-field model. We treat the mineral solid solution as a continuum body, and following the Larché and Cahn network model, we define displacement and strain fields. Consequently, we obtain a set of coupled chemo-mechanical equations. We use the aforementioned framework to study single minerals as solid solutions during metamorphism. Furthermore, we emphasise the use of the phase-field framework as a promising tool to model complex multi-physics processes in geoscience. Without loss of generality, we use common physical and chemical parameters found in the geoscience literature to portrait a comprehensive view of the underlying physics. Thereby, we carry out 2D and 3D numerical simulations using material parameters for mineral solid solutions to showcase and verify the chemo-mechanical interactions of mineral solid solutions that undergo spinodal decomposition, chemical reactions, and deformation.

A large disordered region confers a wide spanning volume to vertebrate Suppressor of Fused as shown in a trans-species solution study.

Hedgehog (Hh) pathway inhibition by the conserved protein Suppressor of Fused (SuFu) is crucial to vertebrate development. By constrast, SuFu removal has little effect in drosophila. Previous publications showed that the crystal structures of human and drosophila SuFu consist of two ordered domains that are capable of breathing motions upon ligand binding. However, the crystal structure of human SuFu does not give information about 20 N-terminal residues (IDR1) and an eighty-residue-long disordered region (IDR2) in the C-terminus, whose function is important for the pathway repression. These two IDRs are species-dependent. We studied SuFu structure in solution, both with circular dichroism and small angle X-ray scattering, comparing drosophila, zebrafish and human species, to better understand this considerable difference. Our studies show that, in spite of similar crystal structures restricted to ordered domains, drosophila and vertebrate SuFu have very different structures in solution. The IDR2 of vertebrates spans a large area, thus enabling it to reach for partners and be accessible for post-translational modifications. Furthermore, we show that the IDR2 region is highly conserved within phyla but varies in length and sequence, with insects having a shorter disordered region while that of vertebrates is broad and mobile. This major variation may explain the different phenotypes observed upon SuFu removal.

A career in phthalocyanine chemistry – the Linstead Award 2002

A stroll through memory lane highlighting the author's contributions to phthalocyanines, including synthetic aspects especially of binuclear species, manganese oxygen breathing chemistry, mixed valence species, solution and surface electrochemistry, electrocatalysis, two-electron concerted processes, charge transfer spectroscopy, ligand electrochemical parameter applications and phthalocyanine design.