Regulatory Genomics - Lecture Notes in Computer Science
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Published By Springer Berlin Heidelberg

9783540244561, 9783540322801

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PhyloGibbs: A Gibbs Sampler Incorporating Phylogenetic Information

Regulatory Genomics - Lecture Notes in Computer Science ◽

10.1007/978-3-540-32280-1_4 ◽

2005 ◽

pp. 30-41 ◽

Author(s):

Rahul Siddharthan ◽

Erik van Nimwegen ◽

Eric D. Siggia

Keyword(s):

Gibbs Sampler ◽

Phylogenetic Information

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Detecting Functional Modules of Transcription Factor Binding Sites in the Human Genome

Regulatory Genomics - Lecture Notes in Computer Science ◽

10.1007/978-3-540-32280-1_2 ◽

2005 ◽

pp. 14-21

Author(s):

Thomas Manke ◽

Christoph Dieterich ◽

Martin Vingron

Keyword(s):

Transcription Factor ◽

Human Genome ◽

Binding Sites ◽

Transcription Factor Binding Sites ◽

Transcription Factor Binding ◽

Functional Modules ◽

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Modeling and Analysis of Heterogeneous Regulation in Biological Networks

Regulatory Genomics - Lecture Notes in Computer Science ◽

10.1007/978-3-540-32280-1_10 ◽

2005 ◽

pp. 98-113 ◽

Author(s):

Irit Gat-Viks ◽

Amos Tanay ◽

Ron Shamir

Keyword(s):

Biological Networks ◽

Modeling And Analysis

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Learning Regulatory Network Models that Represent Regulator States and Roles

Regulatory Genomics - Lecture Notes in Computer Science ◽

10.1007/978-3-540-32280-1_6 ◽

2005 ◽

pp. 52-64 ◽

Author(s):

Keith Noto ◽

Mark Craven

Keyword(s):

Regulatory Network ◽

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Fishing for Proteins in the Pacific Northwest

Regulatory Genomics - Lecture Notes in Computer Science ◽

10.1007/978-3-540-32280-1_3 ◽

2005 ◽

pp. 22-29

Author(s):

William Krivan

Keyword(s):

Pacific Northwest ◽

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Predicting Genetic Regulatory Response Using Classification: Yeast Stress Response

Regulatory Genomics - Lecture Notes in Computer Science ◽

10.1007/978-3-540-32280-1_1 ◽

2005 ◽

pp. 1-13 ◽

Author(s):

Manuel Middendorf ◽

Anshul Kundaje ◽

Chris Wiggins ◽

Yoav Freund ◽

Christina Leslie

Keyword(s):

Stress Response ◽

Regulatory Response

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Using Expression Data to Discover RNA and DNA Regulatory Sequence Motifs

Regulatory Genomics - Lecture Notes in Computer Science ◽

10.1007/978-3-540-32280-1_7 ◽

2005 ◽

pp. 65-78 ◽

Author(s):

Chaya Ben-Zaken Zilberstein ◽

Eleazar Eskin ◽

Zohar Yakhini

Keyword(s):

Regulatory Sequence ◽

Expression Data ◽

Sequence Motifs ◽

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Parameter Landscape Analysis for Common Motif Discovery Programs

Regulatory Genomics - Lecture Notes in Computer Science ◽

10.1007/978-3-540-32280-1_8 ◽

2005 ◽

pp. 79-87 ◽

Author(s):

Natalia Polouliakh ◽

Michiko Konno ◽

Paul Horton ◽

Kenta Nakai

Keyword(s):

Motif Discovery ◽

Landscape Analysis ◽

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Inferring Cis-region Hierarchies from Patterns in Time-Course Gene Expression Data

Regulatory Genomics - Lecture Notes in Computer Science ◽

10.1007/978-3-540-32280-1_9 ◽

2005 ◽

pp. 88-97

Author(s):

Vladimir Filkov ◽

Nameeta Shah

Keyword(s):

Gene Expression ◽

Gene Expression Data ◽

Time Course ◽

Expression Data

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Application of Kernel Method to Reveal Subtypes of TF Binding Motifs

Regulatory Genomics - Lecture Notes in Computer Science ◽

10.1007/978-3-540-32280-1_5 ◽

2005 ◽

pp. 42-51 ◽

Author(s):

Alexander Kel ◽

Yury Tikunov ◽

Nico Voss ◽

Jürgen Borlak ◽

Edgar Wingender

Keyword(s):

Kernel Method ◽

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