scholarly journals Phylogenetic Relationships Among the Cyanobacteria Based on 16S rRNA Sequences

2015 ◽  
pp. 1-9 ◽  
Author(s):  
Annick Wilmotte ◽  
Michael Herdman
Keyword(s):  
16S Rrna ◽  
Phylogenetic Relationships ◽  
Rrna Sequences ◽  
16S Rrna Sequences

Phylogenetic relationships within the genus Staurois (Anura, Ranidae) based on 16S rRNA sequences

Zootaxa ◽  
2011 ◽  
Vol 2744 (1) ◽  
pp. 39 ◽  
Author(s):  
UMILAELA ARIFIN ◽  
DJOKO T. ISKANDAR ◽  
DAVID P. BICKFORD ◽  
RAFE M. BROWN ◽  
RUDOLF MEIER ◽  
...  
Keyword(s):  
Genetic Variation ◽  
New Species ◽  
16S Rrna ◽  
Phylogenetic Tree ◽  
Bayesian Methods ◽  
Phylogenetic Relationships ◽  
Maximum Parsimony ◽  
The Philippines ◽  
Rrna Sequences ◽  
16S Rrna Sequences

We estimate the phylogenetic relationships among all six recognized species of the genus Staurois based on 16S rRNA sequences (~522 bp) for 92 specimens from Borneo and the Philippines. Our preferred phylogenetic tree inferred from Maximum Parsimony and Bayesian methods reveal six major clades within the genus leading to recognition of S. natator, S. nubilus, S. guttatus, S. tuberilinguis, S. parvus, and S. latopalmatus. For species where multiple populations were assessed, we found high genetic variation that may eventually support the recognition of new species.

scholarly journals CVTree: A Parallel Alignment-free Phylogeny and Taxonomy Tool based on Composition Vectors of Genomes

2021 ◽  
Author(s):  
Guanghong Zuo
Keyword(s):  
16S Rrna ◽  
Phylogenetic Relationships ◽  
Genome Sequences ◽  
Link Type ◽  
Alignment Free ◽  
Whole Genomes ◽  
Parallel Workflow ◽  
Rrna Sequences ◽  
16S Rrna Sequences

ABSTRACTCVTree is an alignment-free algorithm to infer phylogenetic relationships from genome sequences. It had been successfully applied to study phylogeny and taxonomy of viruses, prokaryotes, and fungi based on the whole genomes, as well as chloroplasts, mitochondria, and metagenomes. Here we presented the standalone software for the CVTree algorithm. In the software, a parallel workflow for the CVTree algorithm was designed. Based on the workflow, new alignment-free methods were also implemented. And by examining the phylogeny and taxonomy of 13903 prokaryotes based on 16S rRNA sequences, we showed that CVTree software is an efficient and effective tool for the studying of phylogeny and taxonomy based on genome sequences.Availabilityhttps://github.com/ghzuo/cvtree

scholarly journals Correction to: Bacterial community assemblages in classroom floor dust of 50 public schools in a large city: characterization using 16S rRNA sequences and associations with environmental factors

Microbiome ◽  
2021 ◽  
Vol 9 (1) ◽  
Author(s):  
Ju-Hyeong Park ◽  
Angela R. Lemons ◽  
Jerry Roseman ◽  
Brett J. Green ◽  
Jean M. Cox-Ganser
Keyword(s):  
Public Schools ◽  
Environmental Factors ◽  
Bacterial Community ◽  
16S Rrna ◽  
Large City ◽  
Floor Dust ◽  
Community Assemblages ◽  
Rrna Sequences ◽  
16S Rrna Sequences

An amendment to this paper has been published and can be accessed via the original article.

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