Molecular Recognition Analyzed by EPR, ENDOR, and NMR Spectroscopy

1996 ◽  
Vol 35 (16) ◽  
pp. 1815-1818 ◽  
Author(s):  
Martin Jäger ◽  
Hartmut B. Stegmann
1991 ◽  
Vol 56 (21) ◽  
pp. 6083-6094 ◽  
Author(s):  
Arie R. Van Doorn ◽  
Robert Schaafstra ◽  
Martinus Bos ◽  
Sybolt Harkema ◽  
Johan Van Eerden ◽  
...  

2020 ◽  
Vol 5 (42) ◽  
pp. 13183-13190
Author(s):  
Riddhi Gupta ◽  
Rajesh G. Gonnade ◽  
Ashutosh V. Bedekar

2017 ◽  
Vol 63 ◽  
pp. 567-583
Author(s):  
Jeremy K. M. Sanders ◽  
Dame Carol V. Robinson

Dudley Williams was a pioneer in using nuclear magnetic resonance (NMR) spectroscopy and mass spectrometry (MS) to solve important structural problems in Chemistry and Biology. His 35-year quest to understand the structure and mode of action of the vancomycin antibiotics led him to fundamental thinking about the nature and thermodynamics of molecular recognition, in particular the roles of solvation, flexibility, entropy, enthalpy and cooperativity. He was always keen that his expertise be used for practical benefit through his academic research and industrial consulting. His legacy also includes a set of textbooks that transformed the use of spectroscopic methods in organic chemistry, and a school of former PhD students and postdoctoral colleagues who have themselves made major contributions across a broad swathe of science.


1991 ◽  
Vol 56 (7) ◽  
pp. 2371-2380 ◽  
Author(s):  
Arie R. Van Doorn ◽  
Martinus Bos ◽  
Sybolt Harkema ◽  
Johan Van Eerden ◽  
Willem Verboom ◽  
...  

2013 ◽  
Vol 19 (21) ◽  
pp. 6641-6649 ◽  
Author(s):  
Filipa Marcelo ◽  
Catarina Dias ◽  
Alice Martins ◽  
Paulo J. Madeira ◽  
Tiago Jorge ◽  
...  

Author(s):  
Valeria Gabrielli ◽  
Juan C. Muñoz‐García ◽  
Giulia Pergolizzi ◽  
Peterson Andrade ◽  
Yaroslav Z. Khimyak ◽  
...  

2021 ◽  
Vol 8 ◽  
Author(s):  
Cátia Oliveira Soares ◽  
Ana Sofia Grosso ◽  
June Ereño-Orbea ◽  
Helena Coelho ◽  
Filipa Marcelo

All cells are decorated with a highly dense and complex structure of glycan chains, which are mostly attached to proteins and lipids. In this context, sialic acids are a family of nine-carbon acidic monosaccharides typically found at the terminal position of glycan chains, modulating several physiological and pathological processes. Sialic acids have many structural and modulatory roles due to their negative charge and hydrophilicity. In addition, the recognition of sialic acid glycans by mammalian cell lectins, such as siglecs, has been described as an important immunological checkpoint. Furthermore, sialic acid glycans also play a pivotal role in host–pathogen interactions. Various pathogen receptors exposed on the surface of viruses and bacteria are responsible for the binding to sialic acid sugars located on the surface of host cells, becoming a critical point of contact in the infection process. Understanding the molecular mechanism of sialic acid glycans recognition by sialic acid-binding proteins, present on the surface of pathogens or human cells, is essential to realize the biological mechanism of these events and paves the way for the rational development of strategies to modulate sialic acid-protein interactions in diseases. In this perspective, nuclear magnetic resonance (NMR) spectroscopy, assisted with molecular modeling protocols, is a versatile and powerful technique to investigate the structural and dynamic aspects of glycoconjugates and their interactions in solution at the atomic level. NMR provides the corresponding ligand and protein epitopes, essential for designing and developing potential glycan-based therapies. In this review, we critically discuss the current state of knowledge about the structural features behind the molecular recognition of sialic acid glycans by different receptors, naturally present on human cells or pathogens, disclosed by NMR spectroscopy and molecular modeling protocols.


2019 ◽  
Vol 116 (36) ◽  
pp. 17648-17653 ◽  
Author(s):  
Faiz-Ur Rahman ◽  
Yong-sheng Li ◽  
Ioannis D. Petsalakis ◽  
Giannoula Theodorakopoulos ◽  
Julius Rebek ◽  
...  

We describe here the effects of metal complexation on the molecular recognition behavior of cavitands with quinoxaline walls. The nitrogen atoms of the quinoxalines are near the upper rim of the vase-like shape and treatment with Pd(II) gave 2:1 metal:cavitand derivatives. Characterization by 1H, 13C NMR spectroscopy, HR ESI-MS, and computations showed that the metals bridged adjacent quinoxaline panels and gave cavitands with C2v symmetry. Both water-soluble and organic-soluble versions were prepared and their host/guest complexes with alkanes, alcohols, acids, and diols (up to C12) were studied by 1H NMR spectroscopy. Analysis of the binding behavior indicated that the metals rigidified the walls of the receptive vase conformation and enhanced the binding of hydrophobic and even water-soluble guests, compared to related cavitands reported previously. The results demonstrated that the conformational dynamics of the cavitand were slowed by the coordination of Pd(II) and stabilized the host’s complexes.


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