Natural coordinate representation for the protein backbone structure

Proteins Structure Function and Bioinformatics ◽

10.1002/prot.10201 ◽

2002 ◽

Vol 49 (2) ◽

pp. 206-215 ◽

Author(s):

Cornelius G. Hunter ◽

Shankar Subramaniam

Keyword(s):

Protein Backbone ◽

Coordinate Representation ◽

Backbone Structure ◽

Natural Coordinate

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Deriving High-Resolution Protein Backbone Structure Propensities from All Crystal Data Using the Information Maximization Device

PLoS ONE ◽

10.1371/journal.pone.0094334 ◽

2014 ◽

Vol 9 (6) ◽

pp. e94334 ◽

Author(s):

Armando D. Solis

Keyword(s):

High Resolution ◽

Crystal Data ◽

Protein Backbone ◽

Information Maximization ◽

Backbone Structure

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Improvements to REDCRAFT: a software tool for simultaneous characterization of protein backbone structure and dynamics from residual dipolar couplings

Journal of Biomolecular NMR ◽

10.1007/s10858-014-9871-x ◽

2014 ◽

Vol 60 (4) ◽

pp. 241-264 ◽

Author(s):

Mikhail Simin ◽

Stephanie Irausquin ◽

Casey A. Cole ◽

Homayoun Valafar

Keyword(s):

Residual Dipolar Couplings ◽

Software Tool ◽

Dipolar Couplings ◽

Protein Backbone ◽

Structure And Dynamics ◽

Backbone Structure

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Faculty Opinions recommendation of De novo determination of protein backbone structure from residual dipolar couplings using Rosetta.

Faculty Opinions – Post-Publication Peer Review of the Biomedical Literature ◽

10.3410/f.1006182.77113 ◽

2002 ◽

Author(s):

Kristina Downing

Keyword(s):

Residual Dipolar Couplings ◽

De Novo ◽

Dipolar Couplings ◽

Protein Backbone ◽

Backbone Structure

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Algorithms and Analytic Solutions Using Sparse Residual Dipolar Couplings for High-Resolution Automated Protein Backbone Structure Determination by NMR

Springer Tracts in Advanced Robotics - Algorithmic Foundations of Robotics IX ◽

10.1007/978-3-642-17452-0_21 ◽

2010 ◽

pp. 355-372 ◽

Author(s):

Anna Yershova ◽

Chittaranjan Tripathy ◽

Pei Zhou ◽

Bruce Randall Donald

Keyword(s):

High Resolution ◽

Structure Determination ◽

Residual Dipolar Couplings ◽

Analytic Solutions ◽

Dipolar Couplings ◽

Protein Backbone ◽

Backbone Structure

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REDCRAFT: A tool for simultaneous characterization of protein backbone structure and motion from RDC data

Journal of Magnetic Resonance ◽

10.1016/j.jmr.2008.01.007 ◽

2008 ◽

Vol 191 (2) ◽

pp. 322-334 ◽

Author(s):

Michael Bryson ◽

Fang Tian ◽

James H. Prestegard ◽

Homayoun Valafar

Keyword(s):

Protein Backbone ◽

Structure And Motion ◽

Backbone Structure

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Protein backbone structure determination using RDC: An inverse kinematics approach with fast and exact solutions

International Journal of Quantum Chemistry ◽

10.1002/qua.24166 ◽

2012 ◽

Vol 113 (8) ◽

pp. 1095-1106

Author(s):

Sotirios I. Pantos ◽

Ekaterini Tiligada

Keyword(s):

Exact Solutions ◽

Structure Determination ◽

Inverse Kinematics ◽

Protein Backbone ◽

Backbone Structure

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An exact algorithm for determining protein backbone structure from NH residual dipolar couplings

Computational Systems Bioinformatics. CSB2003. Proceedings of the 2003 IEEE Bioinformatics Conference. CSB2003 ◽

10.1109/csb.2003.1227422 ◽

2004 ◽

Author(s):

L. Wang ◽

R.R. Mettu ◽

R. Lilien ◽

B.R. Donald

Keyword(s):

Residual Dipolar Couplings ◽

Exact Algorithm ◽

Dipolar Couplings ◽

Protein Backbone ◽

Backbone Structure

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De Novo Determination of Protein Backbone Structure from Residual Dipolar Couplings Using Rosetta

Journal of the American Chemical Society ◽

10.1021/ja016880e ◽

2002 ◽

Vol 124 (11) ◽

pp. 2723-2729 ◽

Author(s):

Carol A. Rohl ◽

David Baker

Keyword(s):

Residual Dipolar Couplings ◽

De Novo ◽

Dipolar Couplings ◽

Protein Backbone ◽

Backbone Structure

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Deep Learning to Predict Protein Backbone Structure from High-Resolution Cryo-EM Density Maps

Scientific Reports ◽

10.1038/s41598-020-60598-y ◽

2020 ◽

Vol 10 (1) ◽

Author(s):

Dong Si ◽

Spencer A. Moritz ◽

Jonas Pfab ◽

Jie Hou ◽

Renzhi Cao ◽

...

Keyword(s):

Deep Learning ◽

High Resolution ◽

Protein Backbone ◽

Density Maps ◽

Backbone Structure

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Analysis of a systematic search-based algorithm for determining protein backbone structure from a minimum number of residual dipolar couplings

Proceedings. 2004 IEEE Computational Systems Bioinformatics Conference, 2004. CSB 2004. ◽

10.1109/csb.2004.1332445 ◽

2004 ◽

Author(s):

Lincong Wang ◽

B.R. Donald

Keyword(s):

Residual Dipolar Couplings ◽

Dipolar Couplings ◽

Systematic Search ◽

Protein Backbone ◽

Minimum Number ◽

Backbone Structure

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