Importance of secondary structure specificity determinants in protein folding and stability

2006 ◽  
pp. 277-279
Author(s):  
Stanley C. Kwok ◽  
Colin T. Mant ◽  
Robert S. Hodges
Keyword(s):  
Protein Folding ◽  
Secondary Structure ◽  
Specificity Determinants

scholarly journals Speed limit of protein folding evidenced in secondary structure dynamics

2011 ◽  
Vol 108 (40) ◽  
pp. 16622-16627 ◽  
Author(s):  
M. M. Lin ◽  
O. F. Mohammed ◽  
G. S. Jas ◽  
A. H. Zewail
Keyword(s):  
Protein Folding ◽  
Secondary Structure ◽  
Speed Limit ◽  
Structure Dynamics

Backbone dihedral angles prediction servers for protein early-stage structure prediction

2019 ◽  
Vol 15 (4) ◽  
Author(s):  
Tomasz Smolarczyk ◽  
Katarzyna Stapor ◽  
Irena Roterman-Konieczna
Keyword(s):  
Protein Folding ◽  
Secondary Structure ◽  
Protein Function ◽  
Structure Prediction ◽  
Secondary Structure Prediction ◽  
Early Stage ◽  
Three Dimensional ◽  
Stage Structure ◽  
Dihedral Angles ◽  
Starting Point

AbstractThree-dimensional protein structure prediction is an important task in science at the intersection of biology, chemistry, and informatics, and it is crucial for determining the protein function. In the two-stage protein folding model, based on an early- and late-stage intermediates, we propose to use state-of-the-art secondary structure prediction servers for backbone dihedral angles prediction and devise an early-stage structure. Early-stage structures are used as a starting point for protein folding simulations, and any errors in this stage affect the final predictions. We have shown that modern secondary structure prediction servers could increase the accuracy of early-stage predictions compared to previously reported models.

Determination of protein folding kinetic types using sequence and predicted secondary structure and solvent accessibility

Amino Acids ◽  
2010 ◽  
Vol 42 (1) ◽  
pp. 271-283 ◽  
Author(s):  
Hua Zhang ◽  
Tuo Zhang ◽  
Jianzhao Gao ◽  
Jishou Ruan ◽  
Shiyi Shen ◽  
...  
Keyword(s):  
Protein Folding ◽  
Secondary Structure ◽  
Solvent Accessibility

scholarly journals Disulfide Selectivity under the Control of Secondary Structure in Protein Folding

2016 ◽  
Vol 110 (3) ◽  
pp. 210a
Author(s):  
Kosuke Toyama ◽  
Masaki Okumura ◽  
Shigeru Shimamoto ◽  
Yuji Hidaka
Keyword(s):  
Protein Folding ◽  
Secondary Structure

scholarly journals Using Neural Networks to Predict Secondary Structure for Protein Folding

2017 ◽  
Vol 05 (01) ◽  
pp. 1-8 ◽  
Author(s):  
Ali Abdulhafidh Ibrahim ◽  
Ibrahim Sabah Yasseen
Keyword(s):  
Neural Networks ◽  
Protein Folding ◽  
Secondary Structure

Peptide models of protein folding initiation sites. 1. Secondary structure formation by peptides corresponding to the G- and H-helixes of myoglobin

Biochemistry ◽  
1993 ◽  
Vol 32 (25) ◽  
pp. 6337-6347 ◽  
Author(s):  
Jonathan P. Waltho ◽  
Victoria A. Feher ◽  
Gene Merutka ◽  
H. Jane Dyson ◽  
Peter E. Wright
Keyword(s):  
Protein Folding ◽  
Secondary Structure ◽  
Structure Formation ◽  
Secondary Structure Formation ◽  
Peptide Models

Prediction of protein folding rates from simplified secondary structure alphabet

2015 ◽  
Vol 383 ◽  
pp. 1-6 ◽  
Author(s):  
Jitao T. Huang ◽  
Titi Wang ◽  
Shanran R. Huang ◽  
Xin Li
Keyword(s):  
Protein Folding ◽  
Secondary Structure ◽  
Folding Rates
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