scholarly journals Speed limit of protein folding evidenced in secondary structure dynamics

2011 ◽  
Vol 108 (40) ◽  
pp. 16622-16627 ◽  
Author(s):  
M. M. Lin ◽  
O. F. Mohammed ◽  
G. S. Jas ◽  
A. H. Zewail
Keyword(s):  
Protein Folding ◽  
Secondary Structure ◽  
Speed Limit ◽  
Structure Dynamics

scholarly journals Photoactivation Mechanism, Timing of Protein Secondary Structure Dynamics and Carotenoid Translocation in the Orange Carotenoid Protein

2018 ◽  
Vol 141 (1) ◽  
pp. 520-530 ◽  
Author(s):  
Patrick E. Konold ◽  
Ivo H. M. van Stokkum ◽  
Fernando Muzzopappa ◽  
Adjélé Wilson ◽  
Marie-Louise Groot ◽  
...  
Keyword(s):  
Secondary Structure ◽  
Protein Secondary Structure ◽  
Structure Dynamics ◽  
Orange Carotenoid Protein

Backbone dihedral angles prediction servers for protein early-stage structure prediction

2019 ◽  
Vol 15 (4) ◽  
Author(s):  
Tomasz Smolarczyk ◽  
Katarzyna Stapor ◽  
Irena Roterman-Konieczna
Keyword(s):  
Protein Folding ◽  
Secondary Structure ◽  
Protein Function ◽  
Structure Prediction ◽  
Secondary Structure Prediction ◽  
Early Stage ◽  
Three Dimensional ◽  
Stage Structure ◽  
Dihedral Angles ◽  
Starting Point

AbstractThree-dimensional protein structure prediction is an important task in science at the intersection of biology, chemistry, and informatics, and it is crucial for determining the protein function. In the two-stage protein folding model, based on an early- and late-stage intermediates, we propose to use state-of-the-art secondary structure prediction servers for backbone dihedral angles prediction and devise an early-stage structure. Early-stage structures are used as a starting point for protein folding simulations, and any errors in this stage affect the final predictions. We have shown that modern secondary structure prediction servers could increase the accuracy of early-stage predictions compared to previously reported models.

Determination of protein folding kinetic types using sequence and predicted secondary structure and solvent accessibility

Amino Acids ◽  
2010 ◽  
Vol 42 (1) ◽  
pp. 271-283 ◽  
Author(s):  
Hua Zhang ◽  
Tuo Zhang ◽  
Jianzhao Gao ◽  
Jishou Ruan ◽  
Shiyi Shen ◽  
...  
Keyword(s):  
Protein Folding ◽  
Secondary Structure ◽  
Solvent Accessibility

scholarly journals Disulfide Selectivity under the Control of Secondary Structure in Protein Folding

2016 ◽  
Vol 110 (3) ◽  
pp. 210a
Author(s):  
Kosuke Toyama ◽  
Masaki Okumura ◽  
Shigeru Shimamoto ◽  
Yuji Hidaka
Keyword(s):  
Protein Folding ◽  
Secondary Structure

scholarly journals The speed limit for protein folding measured by triplet-triplet energy transfer

1999 ◽  
Vol 96 (17) ◽  
pp. 9597-9601 ◽  
Author(s):  
O. Bieri ◽  
J. Wirz ◽  
B. Hellrung ◽  
M. Schutkowski ◽  
M. Drewello ◽  
...  
Keyword(s):  
Protein Folding ◽  
Energy Transfer ◽  
Speed Limit ◽  
Triplet Energy ◽  
Triplet Energy Transfer

scholarly journals Using Neural Networks to Predict Secondary Structure for Protein Folding

2017 ◽  
Vol 05 (01) ◽  
pp. 1-8 ◽  
Author(s):  
Ali Abdulhafidh Ibrahim ◽  
Ibrahim Sabah Yasseen
Keyword(s):  
Neural Networks ◽  
Protein Folding ◽  
Secondary Structure

scholarly journals A speed limit for protein folding.

1996 ◽  
Vol 93 (21) ◽  
pp. 11426-11427 ◽  
Author(s):  
J. A. McCammon
Keyword(s):  
Protein Folding ◽  
Speed Limit
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