Web Services Interface to Run Protein Sequence Tools on Grid, Testcase of Protein Sequence Alignment

Biological and Medical Data Analysis - Lecture Notes in Computer Science ◽

10.1007/11946465_22 ◽

2006 ◽

pp. 240-249 ◽

Author(s):

Christophe Blanchet ◽

Christophe Combet ◽

Vladimir Daric ◽

Gilbert Deléage

Keyword(s):

Web Services ◽

Sequence Alignment ◽

Protein Sequence ◽

Protein Sequence Alignment

Download Full-text

Protein sequence alignment of target for entanyl analgesics μ-opioid receptor and its analysis

The 2nd International Conference on Information Science and Engineering ◽

10.1109/icise.2010.5689963 ◽

2010 ◽

Author(s):

Ming Liu ◽

Ping Wan ◽

Wen-Xiang Hu

Keyword(s):

Opioid Receptor ◽

Sequence Alignment ◽

Protein Sequence ◽

Protein Sequence Alignment ◽

Download Full-text

[14] Consensus methods for DNA and protein sequence alignment

Methods in Enzymology ◽

10.1016/0076-6879(90)83016-3 ◽

1990 ◽

pp. 221-237 ◽

Author(s):

Michael S. Waterman ◽

Robert Jones

Keyword(s):

Sequence Alignment ◽

Protein Sequence ◽

Consensus Methods ◽

Protein Sequence Alignment

Download Full-text

Large Scale Protein Sequence Alignment Using FPGA Reprogrammable Logic Devices

Field Programmable Logic and Application - Lecture Notes in Computer Science ◽

10.1007/978-3-540-30117-2_5 ◽

2004 ◽

pp. 23-32 ◽

Author(s):

Stefan Dydel ◽

Piotr Bała

Keyword(s):

Sequence Alignment ◽

Protein Sequence ◽

Large Scale ◽

Protein Sequence Alignment ◽

Download Full-text

Nucleic Acid and Protein Sequence Alignment Methods and Algorithms. Current Progress and Next Generation Sequenc Alignment or Future Trends.

International Conference on Advanced Computer Theory and Engineering, 5th (ICACTE 2012) ◽

10.1115/1.860045_ch43 ◽

2012 ◽

pp. 323-332

Keyword(s):

Nucleic Acid ◽

Sequence Alignment ◽

Protein Sequence ◽

Future Trends ◽

Next Generation ◽

Protein Sequence Alignment

Download Full-text

Protein Sequence Alignment Analysis by Local Covariation: Coevolution Statistics Detect Benchmark Alignment Errors

PLoS ONE ◽

10.1371/journal.pone.0037645 ◽

2012 ◽

Vol 7 (6) ◽

pp. e37645 ◽

Author(s):

Russell J. Dickson ◽

Gregory B. Gloor

Keyword(s):

Sequence Alignment ◽

Protein Sequence ◽

Protein Sequence Alignment ◽

Alignment Errors ◽

Alignment Analysis

Download Full-text

PR2ALIGN: a stand-alone software program and a web-server for protein sequence alignment using weighted biochemical properties of amino acids

BMC Research Notes ◽

10.1186/s13104-015-1152-6 ◽

2015 ◽

Vol 8 (1) ◽

Author(s):

Igor B Kuznetsov ◽

Michael McDuffie

Keyword(s):

Amino Acids ◽

Sequence Alignment ◽

Protein Sequence ◽

Biochemical Properties ◽

Protein Sequence Alignment ◽

Software Program

Download Full-text

H-BLAST: a fast protein sequence alignment toolkit on heterogeneous computers with GPUs

Bioinformatics ◽

10.1093/bioinformatics/btw769 ◽

2017 ◽

pp. btw769 ◽

Author(s):

Weicai Ye ◽

Ying Chen ◽

Yongdong Zhang ◽

Yuesheng Xu

Keyword(s):

Sequence Alignment ◽

Protein Sequence ◽

Protein Sequence Alignment

Download Full-text

High quality protein sequence alignment by combining structural profile prediction and profile alignment using SABER-TOOTH

BMC Bioinformatics ◽

10.1186/1471-2105-11-251 ◽

2010 ◽

Vol 11 (1) ◽

pp. 251 ◽

Author(s):

Florian Teichert ◽

Jonas Minning ◽

Ugo Bastolla ◽

Markus Porto

Keyword(s):

Sequence Alignment ◽

Protein Sequence ◽

High Quality ◽

Structural Profile ◽

Protein Sequence Alignment ◽

High Quality Protein ◽

Profile Alignment

Download Full-text

GPU-BLAST: using graphics processors to accelerate protein sequence alignment

Bioinformatics ◽

10.1093/bioinformatics/btq644 ◽

2010 ◽

Vol 27 (2) ◽

pp. 182-188 ◽

Author(s):

P. D. Vouzis ◽

N. V. Sahinidis

Keyword(s):

Sequence Alignment ◽

Protein Sequence ◽

Graphics Processors ◽

Protein Sequence Alignment

Download Full-text

Linear predictive coding representation of correlated mutation for protein sequence alignment

BMC Bioinformatics ◽

10.1186/1471-2105-11-s2-s2 ◽

2010 ◽

Vol 11 (S2) ◽

Author(s):

Chan-seok Jeong ◽

Dongsup Kim

Keyword(s):

Sequence Alignment ◽

Protein Sequence ◽

Predictive Coding ◽

Linear Predictive Coding ◽

Protein Sequence Alignment ◽

Correlated Mutation

Download Full-text