Large Scale Protein Sequence Alignment Using FPGA Reprogrammable Logic Devices

Field Programmable Logic and Application - Lecture Notes in Computer Science ◽

10.1007/978-3-540-30117-2_5 ◽

2004 ◽

pp. 23-32 ◽

Author(s):

Stefan Dydel ◽

Piotr Bała

Keyword(s):

Sequence Alignment ◽

Protein Sequence ◽

Large Scale ◽

Protein Sequence Alignment ◽

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Large-scale comparison of protein sequence alignment algorithms with structure alignments

Proteins Structure Function and Bioinformatics ◽

10.1002/(sici)1097-0134(20000701)40:1<6::aid-prot30>3.0.co;2-7 ◽

2000 ◽

Vol 40 (1) ◽

pp. 6-22 ◽

Author(s):

J. Michael Sauder ◽

Jonathan W. Arthur ◽

Roland L. Dunbrack Jr.

Keyword(s):

Sequence Alignment ◽

Protein Sequence ◽

Large Scale ◽

Protein Sequence Alignment ◽

Alignment Algorithms

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Protein sequence alignment of target for entanyl analgesics μ-opioid receptor and its analysis

The 2nd International Conference on Information Science and Engineering ◽

10.1109/icise.2010.5689963 ◽

2010 ◽

Author(s):

Ming Liu ◽

Ping Wan ◽

Wen-Xiang Hu

Keyword(s):

Opioid Receptor ◽

Sequence Alignment ◽

Protein Sequence ◽

Protein Sequence Alignment ◽

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[14] Consensus methods for DNA and protein sequence alignment

Methods in Enzymology ◽

10.1016/0076-6879(90)83016-3 ◽

1990 ◽

pp. 221-237 ◽

Author(s):

Michael S. Waterman ◽

Robert Jones

Keyword(s):

Sequence Alignment ◽

Protein Sequence ◽

Consensus Methods ◽

Protein Sequence Alignment

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Nucleic Acid and Protein Sequence Alignment Methods and Algorithms. Current Progress and Next Generation Sequenc Alignment or Future Trends.

International Conference on Advanced Computer Theory and Engineering, 5th (ICACTE 2012) ◽

10.1115/1.860045_ch43 ◽

2012 ◽

pp. 323-332

Keyword(s):

Nucleic Acid ◽

Sequence Alignment ◽

Protein Sequence ◽

Future Trends ◽

Next Generation ◽

Protein Sequence Alignment

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Protein Sequence Alignment Analysis by Local Covariation: Coevolution Statistics Detect Benchmark Alignment Errors

PLoS ONE ◽

10.1371/journal.pone.0037645 ◽

2012 ◽

Vol 7 (6) ◽

pp. e37645 ◽

Author(s):

Russell J. Dickson ◽

Gregory B. Gloor

Keyword(s):

Sequence Alignment ◽

Protein Sequence ◽

Protein Sequence Alignment ◽

Alignment Errors ◽

Alignment Analysis

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Web Services Interface to Run Protein Sequence Tools on Grid, Testcase of Protein Sequence Alignment

Biological and Medical Data Analysis - Lecture Notes in Computer Science ◽

10.1007/11946465_22 ◽

2006 ◽

pp. 240-249 ◽

Author(s):

Christophe Blanchet ◽

Christophe Combet ◽

Vladimir Daric ◽

Gilbert Deléage

Keyword(s):

Web Services ◽

Sequence Alignment ◽

Protein Sequence ◽

Protein Sequence Alignment

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PR2ALIGN: a stand-alone software program and a web-server for protein sequence alignment using weighted biochemical properties of amino acids

BMC Research Notes ◽

10.1186/s13104-015-1152-6 ◽

2015 ◽

Vol 8 (1) ◽

Author(s):

Igor B Kuznetsov ◽

Michael McDuffie

Keyword(s):

Amino Acids ◽

Sequence Alignment ◽

Protein Sequence ◽

Biochemical Properties ◽

Protein Sequence Alignment ◽

Software Program

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H-BLAST: a fast protein sequence alignment toolkit on heterogeneous computers with GPUs

Bioinformatics ◽

10.1093/bioinformatics/btw769 ◽

2017 ◽

pp. btw769 ◽

Author(s):

Weicai Ye ◽

Ying Chen ◽

Yongdong Zhang ◽

Yuesheng Xu

Keyword(s):

Sequence Alignment ◽

Protein Sequence ◽

Protein Sequence Alignment

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High quality protein sequence alignment by combining structural profile prediction and profile alignment using SABER-TOOTH

BMC Bioinformatics ◽

10.1186/1471-2105-11-251 ◽

2010 ◽

Vol 11 (1) ◽

pp. 251 ◽

Author(s):

Florian Teichert ◽

Jonas Minning ◽

Ugo Bastolla ◽

Markus Porto

Keyword(s):

Sequence Alignment ◽

Protein Sequence ◽

High Quality ◽

Structural Profile ◽

Protein Sequence Alignment ◽

High Quality Protein ◽

Profile Alignment

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GPU-BLAST: using graphics processors to accelerate protein sequence alignment

Bioinformatics ◽

10.1093/bioinformatics/btq644 ◽

2010 ◽

Vol 27 (2) ◽

pp. 182-188 ◽

Author(s):

P. D. Vouzis ◽

N. V. Sahinidis

Keyword(s):

Sequence Alignment ◽

Protein Sequence ◽

Graphics Processors ◽

Protein Sequence Alignment

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