Identification of Chromatin Binding Sites for Long Noncoding RNAs by Chromatin Oligo-Affinity Precipitation (ChOP)

2020 ◽  
pp. 17-28
Author(s):  
Marianna Nicoletta Rossi ◽  
Rossella Maione
Keyword(s):  
Binding Sites ◽  
Noncoding Rnas ◽  
Long Noncoding Rnas ◽  
Chromatin Binding ◽  
Affinity Precipitation

scholarly journals Deep learning identifies genome-wide DNA binding sites of long noncoding RNAs

RNA Biology ◽  
2018 ◽  
Vol 15 (12) ◽  
pp. 1468-1476 ◽  
Author(s):  
Fan Wang ◽  
Pranik Chainani ◽  
Tommy White ◽  
Jin Yang ◽  
Yu Liu ◽  
...  
Keyword(s):  
Deep Learning ◽  
Dna Binding ◽  
Binding Sites ◽  
Noncoding Rnas ◽  
Long Noncoding Rnas ◽  
Dna Binding Sites ◽  
Genome Wide

scholarly journals Detection of RNA–DNA binding sites in long noncoding RNAs

2019 ◽  
Vol 47 (6) ◽  
pp. e32-e32 ◽  
Author(s):  
Chao-Chung Kuo ◽  
Sonja Hänzelmann ◽  
Nevcin Sentürk Cetin ◽  
Stefan Frank ◽  
Barna Zajzon ◽  
...  
Keyword(s):  
Dna Binding ◽  
Binding Sites ◽  
Noncoding Rnas ◽  
Long Noncoding Rnas ◽  
Dna Binding Sites

scholarly journals RBPSponge: genome-wide identification of lncRNAs that sponge RBPs

2019 ◽  
Author(s):  
Saber HafezQorani ◽  
Aissa Houdjedj ◽  
Mehmet Arici ◽  
Abdesselam Said ◽  
Hilal Kazan
Keyword(s):  
Binding Sites ◽  
Regulatory Network ◽  
Target Genes ◽  
Rna Binding ◽  
Rna Binding Protein ◽  
Noncoding Rnas ◽  
Long Noncoding Rnas ◽  
Web Tool ◽  
Genome Wide ◽  
The Web

AbstractSummaryLong noncoding RNAs (lncRNAs) can act as molecular sponges or decoys for an RNA-binding protein (RBP) through their RBP binding sites, thereby modulating the expression of all target genes of the corresponding RBP of interest. Here, we present a web tool named RBPSponge to explore lncRNAs based on their potential to act as a sponge for an RBP of interest. RBPSponge identifies the occurrences of RBP binding sites and CLIP peaks on lncRNAs, and enables users to run statistical analyses to investigate the regulatory network between lncRNAs, RBPs and targets of RBPs.AvailabilityThe web server is available athttps://[email protected]

Dysregulated Expression of Long Noncoding RNAs in Endometriosis

2019 ◽  
Vol 29 (2) ◽  
pp. 113-121 ◽  
Author(s):  
Xue-ying Zhang ◽  
Lian-wen Zheng ◽  
Chun-jin Li ◽  
Ying Xu ◽  
Xu Zhou ◽  
...  
Keyword(s):  
Noncoding Rnas ◽  
Long Noncoding Rnas
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